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GT14436

CSHL Arabidopsis genetrap mutant lines

Original: GT14436

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14436

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 781560 [Map]; Strand: c
      • AT3G03310.1 - [+] show detail - lecithin:cholesterol acyltransferase 3
        Distance: 0; Region: exon1 (5UTR)
      • AT3G03320.1 - [+] show detail - RNA-binding ASCH domain protein
        Distance: -155; Region: promoter
    Flanking Genome Sequence: GT14436 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTC 
    AGAATATACT GTTTTATTTT TTCCAAAACA TAAATTATAC TATAATTTCA 
    TTTTGTCTTA ACAGATATTT AATTTCATTC TATGTGCTAT ACCAGTGTAA 
    TTTCATTTTG CAATTGTTTT TGTTTTCTTC TCTTAACCAG TGTAAACCGA 
    AACCAAAATT ATTCTAATTT CAATACCAGT TAAACCTAAC CGAAAATTCA 
    ATTTCAATTT CAACCACTGT TTGTTGGTTT CAGCTTAAAG GCAAGCTCAA 
    ATAAACATTT CAATATCCGA ATTTTTCTTA ATTAAGAGGC TTATCGATTC 
    ACGTTGGCGT TTTCGACGAA AATGGAGCAA CCAATGTCGC CGGGAACAAA 
    GTCGGTGAAT CTCCGAGAAT GCATGGAATC ACTTCTACGT TTTACTTTGC 
    GCTCTCATTT AGACGAATCT GTTCCAAGTT TCGGTCTGGA CCTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 799374 [Map]; Strand: c
      • AT3G03370.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1...
        Distance: -226; Region: promoter
      • AT3G03370.2 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -226; Region: promoter
      • AT3G03380.1 - [+] show detail - DegP protease 7
        Distance: -241; Region: promoter
    Flanking Genome Sequence: GT14436 - 5-prime edge 
    ACTTTCTCCC TGATTCTGAC TAGGCTTGTA CCGCGATTTA ATAAAAATAT 
    TATACTTAAA GACTTACGTT TATATGATTT GTTAATTTGA TAGTGGAGTT 
    CTTATATGAA ATTGAAATTG ATTTTTCGGT TAGGTTTAAA TTAGAATTGA 
    TTTTGGTTTC GGTTTACACT GGTTAAGAGA AGAAAACAAA AACAATTGCA 
    CGCGATGGGG ATTTCAGAGA GGAGTGCGTA GATTAAAAAA GGCATGATTT 
    CCAAAGGGGG TACACCCACA GAAGTGCTCT CACGCGCTCA ACGCTCACTT 
    TGTGAGAGTG GGGTGAAATA CAGCCTTCTG ATTGGTTGAA AAACTCTAAA 
    AAAAGTGAAA TAGTATACAT GTTGCTAGCT CCATATTAGG TTTTTCG

AT3G03310.1

Model type
Protein coding
Short Description
lecithin:cholesterol acyltransferase 3
Computational Description
lecithin:cholesterol acyltransferase 3 (LCAT3); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G19860.1); Has 560 Blast hits to 555 proteins in 155 species: Archae - 2; Bacteria - 82; Metazoa - 189; Fungi - 22; Plants - 147; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03320.1

Model type
Protein coding
Short Description
RNA-binding ASCH domain protein
Computational Description
RNA-binding ASCH domain protein; CONTAINS InterPro DOMAIN/s: ProFAR isomerase-like (InterPro:IPR010759), ASCH domain (InterPro:IPR007374); BEST Arabidopsis thaliana protein match is: RNA-binding ASCH domain protein (TAIR:AT2G43465.1); Has 111 Blast hits to 111 proteins in 31 species: Archae - 41; Bacteria - 13; Metazoa - 2; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1); Has 55 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G03370.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: DegP protease 7 (TAIR:AT3G03380.1).
Link
InterPro Scan - TAIR

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR