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GT14438

CSHL Arabidopsis genetrap mutant lines

Original: GT14438

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14438

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18424880 [Map]; Strand: w
      • AT5G45470.1 - [+] show detail - Protein of unknown function (DUF594)
        Distance: 0; Region: exon1 (5UTR)
      • AT5G45472.1 - [+] show detail
        Distance: 0; Region: intron2 (NonCoding)
      • AT5G45475.1 - [+] show detail
        Distance: -957; Region: promoter
    Flanking Genome Sequence: GT14438 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TAATAAGAGG 
    AGCAATCATT CTAAGTCTTA CTCTTCAAGC CATTCTCATA TGCTTCTCTC 
    CTTTATTATG TATATAGTTT CAATGTAAAT ATTATGGTTT TGTATAGGTT 
    TAATTGGAGT CTGTATAGGT TTGGTTTAGC TGGTTTAGAG GCTCTGGTTT 
    AGGCCTGGTC AAATGTATAT AAACCCACAA TTGTATCTTT TACCAAAGGA 
    ATGAGAATGA GATTATTTAC TGATATCCTT TAAGGAAACG CACACCAAGA 
    AGGCTCTTGA TCATGCTCGT TTGGTCCTCT TATCTCTTAG CAGATTGGTC 
    TGCTAATTTT GCTGTTGGTC TCATCTCCAA AAATCAAGGT AAAGATCTCA 
    AACCTGATGA CCCTCCACAA GACAAAAAGC TCATGGCTTT ATGGGCACCA 
    TTCTTGCTCT TACATCTTGG TGGACCAGAC ACTATCACTG CTTACTCTCT 
    TGAAGACAAC GCTCTCTGGC TCCGACACGT TCTTGGGCTG GTCTTTCAGG 
    CTGTTGCTGG TGCCTATGTG GTTATCCAAT CTCTACCCAA TTCTCTTTGG 
    GTGATCATA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14438 - 5-prime edge 
    CCTACTTTCT CCCTGCCTCT TATGTTCCTC TAATCCCAAA CATCTTTGAT 
    GGGTTTTGGT ATTACTTCCA CCATTCTTAC TCTCTTGAGG AATAAAGCTT 
    CTTTTCTCTG TTATTAAGAT GTTTTTTTCT CCGATTCACT TGAGAAGTTT 
    GGGGTTTGTG GAATGTCTTT GGGAAGCCAT TATGTTGCTC AATCGGGTAG 
    AGAGAGAGAG AGACGACAAA GTATTTCGGG TCTAGCTGTT TTTTTGGAGA 
    CAATTAGGGG GGGGGGAAAA AAAATCGATT TACATGTGAC CCCCCAGAGG 
    CCACGACAAT ATTAATAATT TTTGATCCGC TTCGGCCCCG AAACAAAGGA 
    ATGCCACGGG TTTGACTTTT CGTTCTCCCT ATTTCTAAAG TTGAACATTT 
    TTCTTTATAA ATGACTTTTT TGAGGCCTAT GACCCAAAAA AATAAAAATT 
    GACGCCCCTT TTTCGTTTAA ATTTCTAACC CTGGAATATT ATTTCCCCCA 
    CTTTTACAAT CCCTTAATCC GGTTTAACCT ATTACCGCGT TTTTTTAAAA 
    AACATTTTTT

AT5G45470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF594)
Computational Description
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G45472.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G45470
Link
InterPro Scan - TAIR

AT5G45475.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G45480
Link
InterPro Scan - TAIR