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GT14448

CSHL Arabidopsis genetrap mutant lines

Original: GT14448

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14448

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2958251 [Map]; Strand: w
      • AT3G09640.1 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon9 (3UTR)
      • AT3G09640.2 - [+] show detail - ascorbate peroxidase 2
        Distance: 0; Region: exon10 (3UTR)
      • AT3G09650.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -428; Region: promoter
    Flanking Genome Sequence: GT14448 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATAAT ACAATGTCTT 
    CCATTTAATT TTTAAAGTAT TTTCTATGAT TACAATAATA ATGTGAGGGA 
    ACAAGAATCA AGGAGGTAGG AGATGACACC AGATTCCAGA TTACTCCTTG 
    TCAGCAAACC TGCAAAGGAC ATGATGACAT GAGCGTAAGT TATGTTATTA 
    TGATCAAAGT GTTTGCAAAT GAAAAGAGTT TCTGAGGACC ATTCAAAGTT 
    TACGACACTA CATTAGGAGA ATAGGAAAGA AAGTTAAATA AAATGTTGAT 
    GAGAATGATT GTTCTATATG TTACTTACCC GAGTTCTGAC AACTTTAGAT 
    GAGCTTC

AT3G09640.1

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 8439 Blast hits to 8256 proteins in 1276 species: Archae - 55; Bacteria - 2395; Metazoa - 20; Fungi - 832; Plants - 3373; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09640.2

Model type
Protein coding
Short Description
ascorbate peroxidase 2
Curator Summary
Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational Description
ascorbate peroxidase 2 (APX2); CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 1 (TAIR:AT1G07890.8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09650.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.
Computational Description
HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
Link
InterPro Scan - TAIR