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GT14460

CSHL Arabidopsis genetrap mutant lines

Original: GT14460

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14460

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18340548 [Map]; Strand: w
      • AT3G49460.1 - [+] show detail - unknown protein; Has 168 Blast hits to 168 proteins in 31 species: Archae - 0...
        Distance: 0; Region: intron1 (CDS)
      • AT3G49470.1 - [+] show detail - nascent polypeptide-associated complex subunit alpha-like protein 2
        Distance: -428; Region: promoter
    Flanking Genome Sequence: GT14460 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    ACTTTCTAGG CTCAATATTG ACATCAATCC TACTGGAGCC TTAATGAACT 
    TGTAGCTTGT TTGTTTTAAT TAACATGTAC TCAAACTATT TTGTTTACTT 
    GTAAACTAGG CTGAGAAAGA TGTCAACATT GGTGAAAACA GCCAATTTGA 
    ACATTGAATC ATACTGGCCT AGTCTTCCGC CAGAACAAAA ACATGGATGA 
    TCTCATCATG AATGCTGGTG CCGGTGGATC TGCTGCTTCT CCCATGGCCG 
    TTTTTTCTTC TGCACTTTCA TCTGGAAGTG CCACTCAAGC TGCCCCAGTA 
    GCTGAAGAGA AAAATAAGGT ATCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 627419 [Map]; Strand: w
      • AT2G02380.1 - [+] show detail - glutathione S-transferase (class zeta) 2
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT14460 - 5-prime edge 
    CCTACTTTAT CCCTGGTGTT GTGATTAATG ACTCTTTCGC AATAATAATG 
    GTCAGTAGTA ACACATCCAT TTAGTTTGTT TGGTTTTGTT GATGAAAAGG 
    AACATTCGTT TATTCGTCTT GTTGTTTTTC AAATGGACAG TACCTGGATG 
    ATAAGTATCC GGAGCCACCG CTGTTACCAA GTGACTACCA TAAACGGGCG 
    GTAAATTACC AGGTATCTTC GATCCTTTGT CTTCAGATGA TGATGTCTTG 
    CCATCATCTG CAAAACCATG TAGTTAAGTC CAAATGTAGT GAACATTATC 
    AGCTTTAGAT TGCGAGTGTG ATCGTTGTTC TTATTTTGTA TATTTCAGGC 
    GACGAGTATT GTCATGTCTG GTATACAGCC TCATCAAAAT ATGGCTCTTT 
    TTGTGAGAAG ATGAGATTAA TGTAATGGAT TCCACTAATG GAGGTTC

AT2G02380.1

Model type
Protein coding
Short Description
glutathione S-transferase (class zeta) 2
Curator Summary
Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase (class zeta) 2 (GSTZ2); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase zeta 1 (TAIR:AT2G02390.1); Has 17209 Blast hits to 17183 proteins in 1466 species: Archae - 0; Bacteria - 9323; Metazoa - 2194; Fungi - 581; Plants - 2162; Viruses - 0; Other Eukaryotes - 2949 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49460.1

Model type
Protein coding
Computational Description
unknown protein; Has 168 Blast hits to 168 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49470.1

Model type
Protein coding
Short Description
nascent polypeptide-associated complex subunit alpha-like protein 2
Computational Description
nascent polypeptide-associated complex subunit alpha-like protein 2 (NACA2); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex (NAC), alpha subunit family protein (TAIR:AT4G10480.1); Has 1390 Blast hits to 1373 proteins in 295 species: Archae - 27; Bacteria - 8; Metazoa - 613; Fungi - 295; Plants - 175; Viruses - 7; Other Eukaryotes - 265 (source: NCBI BLink).
Link
InterPro Scan - TAIR