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GT14475

CSHL Arabidopsis genetrap mutant lines

Original: GT14475

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14475

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19569402 [Map]; Strand: w
      • AT2G47770.1 - [+] show detail - TSPO(outer membrane tryptophan-rich sensory protein)-related
        Distance: 0; Region: exon1 (3UTR)
      • AT2G47780.1 - [+] show detail - Rubber elongation factor protein (REF)
        Distance: -647; Region: promoter
    Flanking Genome Sequence: GT14475 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAACCAG 
    ACCATTGGAT CGCAAAGACA TCTTTTATGG TATATATCAC AAAAAACAAA 
    AACAACAAGA AACACTCATA TGACTCAGAC TCTACAAACA TCATCGTATA 
    GCGTTTACAG ATCTCACGCG ACTGCAAGCT TTACATTAAC AGCGGCTACA 
    AAGGCAGCCC AAGCCAAACA CGGCTTTACC AGATTACCAG CGACCGGACT 
    TATCTCATTA AAGGCCTTGT AACATCCGAA TAACGCAGCC GATTGACCCA 
    ACCACACCGC AAGCCCCGCT ACTCCCGACC CGACGCGGAA CGTAACCGGA 
    TCCCAAACCA AACAGAGCAA AAACTGAGCT AAGTAAAGAT ACAGAGCATT 
    GGGCTTCTTG TGGAAGCCAC CGTCAACCCA TACAAGCCAC GCAGCCAAAC 
    CCATCAGACC ACTAGAAGCG AGACACGTTG TGTGTAGGAG CCACAGAGGT 
    GGGATCCACG ACGAGGACTT AGCTCGATTC CCGTATCCGT CGCTTGTGCC 
    GAGGAAGTAC GTGGCGAAGA GCGTCACGAG CACAGGAGCC GCAACCGCTA 
    CCGTCAGAGA CTTGAGACCA CGTTTCGCCA TCGCCCTCTT TTGATCGCGT 
    TTTCCTTTGT TGGCGTCAGC GCTT

AT2G47770.1

Model type
Protein coding
Short Description
TSPO(outer membrane tryptophan-rich sensory protein)-related
Curator Summary
Encodes a membrane-bound protein designated AtTSPO (Arabidopsis thaliana TSPO-related). AtTSPO is related to the bacterial outer membrane tryptophan-rich sensory protein (TspO) and the mammalian mitochondrial 18 kDa Translocator Protein (18 kDa TSPO), members of the TspO/MBR domain-containing membrane proteins. Mainly detected in dry seeds, but can be induced in vegetative tissues by osmotic or salt stress or abscisic acid treatment. Located in endoplasmic reticulum and the Golgi stacks.
Computational Description
TSPO(outer membrane tryptophan-rich sensory protein)-related (TSPO); CONTAINS InterPro DOMAIN/s: TspO/MBR-related protein (InterPro:IPR004307); Has 567 Blast hits to 567 proteins in 188 species: Archae - 24; Bacteria - 226; Metazoa - 151; Fungi - 6; Plants - 53; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47780.1

Model type
Protein coding
Short Description
Rubber elongation factor protein (REF)
Computational Description
Rubber elongation factor protein (REF); CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT3G05500.1); Has 126 Blast hits to 126 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 126; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR