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GT14489

CSHL Arabidopsis genetrap mutant lines

Original: GT14489

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14489

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22138874 [Map]; Strand: w
      • AT5G54510.1 - [+] show detail - Auxin-responsive GH3 family protein
        Distance: -5196; Region: intergenic
      • AT5G54520.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 7640; Region: intergenic
    Flanking Genome Sequence: GT14489 - 5-prime edge 
    ATTTGATTTA TAGATTTTTT GTTGTCGCTT TGATATGTGA GAAAAAATGA 
    CAGTTCGCCA CTAAAATCCT AAATATTACT TTAGGAAAAC GAAAATAAAA 
    GCGTTGGAGT TGTAAAAAAT TTTTAAGTTG TAGATGGAAC CCACTTATAT 
    ATTCAAAATC TGATTGATGT ACAATTGTTG AAAGAAACAT TTAAGGTTGT 
    AATTCTTAAC GCCCAACCAA TCATCTTTAG ATCCTATAAT GAGTGCTATG 
    TTCTTCTCTC TCGAAAAAAT TAATTTCATT ACAAAATTCA TCATTAATTA 
    TAACAAGTAG TATGGAAAGA CCTGGAAAAA ATTCTCATTA CCACTCTATA 
    CGAATAAATA CAAATACACC GTATATAAAT GTGGATGTTC GATTTACACT 
    ATAAATTTCG GGATCCAACA CAAACAATAA ACTTTTAAAA ACCACGCATA 
    ATCTATAAAA TACATGTAGT GTAACGTGTA GGCAGCACCG TATCTTATGA 
    AGAGGTTAAA CCTATTATGA TTAGTTCGAA TTAAAAGGGA AGTAAACAAA 
    ATTATAAAAA AGGAAT

AT5G54510.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).
Computational Description
DWARF IN LIGHT 1 (DFL1); FUNCTIONS IN: indole-3-acetic acid amido synthetase activity; INVOLVED IN: auxin homeostasis, response to auxin stimulus, auxin mediated signaling pathway, unidimensional cell growth; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT4G27260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G54520.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G10580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR