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GT14495

CSHL Arabidopsis genetrap mutant lines

Original: GT14495

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14495

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1543307 [Map]; Strand: c
      • AT2G04450.1 - [+] show detail - nudix hydrolase homolog 6
        Distance: -13; Region: promoter
    Flanking Genome Sequence: GT14495 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTCGAACCAA 
    TGTCTTCAAG ATTGTGAAAA TGCCTCTTTG GTTCCAAAGT CGCTGTGTAA
    CTTAAGAGAG AGTGACTGTT CCGTTGACAG AGCAAAATGG CCCAAATCTA
    TTGAAAACCC CAAAAACCTT AATTTGGAAT CTCATCTCAT TTTGCTTCTG
    TTCTTTTCCA AGTAATTTCA ACAAAGTTTG AAACTTTAAG TCTGTGTAGC
    AACTCAATTA CATGGAAATT CTTAAAAGTC TACTCTTTAA GTCGTCCTCT
    GGGCTGAAAC TCTCAGCTTC TTGTTATAAA ACCTGAAGTT CAAATCATTC
    CAATACCACA AATAACTCAA CTTTCTTCAA GGTATGTCTT CTCTTACTCA
    CATTTGATTT TGGGAACTTG AGTTTTCTTA GAATATGGAT TGGTTCTTTT
    TGTAGCATGG ACAGTGAAGC TCAGGAGTCC CTTTTACTTC AAGGGGTTGC
    AGATAATTAT GGAGGTGTTA AGGTGAACTT GACAGAACCA ATGACTATTG
    AGGATTTTGT CCCAAAGCTG AGAGCTTCAC TTGTGTATTG GAGCAATCAG
    GTATTTCATT AATAGACCAC TTCAGATTTG AGACTTAGAG AGACTCTTTA
    GAAGACACTT GTAGTCTAGT GGCAATGAGT TG
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26259113 [Map]; Strand: w
      • AT1G69780.1 - [+] show detail - Homeobox-leucine zipper protein family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14495 - 5-prime edge
    CCTACTTTAT CCGTTTTCGT TTGATAATGG CTTTAAGACA AAGATTGGCA 
    AGAAGAAAAA ACTAAAGAGA AACGAACAAA ATCTCAAGCA AACAGTACTT
    ATCTTCTGTT GCAAAACAGA AGAAGATGTC TTGTAATAAT GGAATGTCAT
    TTTTCCCTTC AAATTTCATG ATCCAAACCT CTTACGAAGA TGATCATCCT
    CATCAATCTC CATCTCTTGC TCCTCTTCTT CCTTCTTGCT CTCTACCTCA
    AGATCTCCAT GGTATATATA TACATAAACT TCCACACACA TCTCCTCTGT
    TTTCTCTCTC TCTATCTCTA TCTCTTTCTA ATGCTCTGTT CTGTTCTGTT
    TCAGGATTTG CTTCGTTTCT AGGTAAGAGA TCTCCAATGG AAGGGTGTTG
    TGATTTAGAA ACTGGGAACA ATATGAATGG AGAAGAGGAT TATTCAGATG
    ATGGGTCACA AATGGGAGAG AAGAAGAGGA GATTGAACAT GGAACAAGTG
    AAGACACTAG AGAAGAACTT TGAGCTTGGA AACAAACTTG AACCAGAGAG
    GAAAATGCAG CTAGCTCGTG CCTTAGGTTT GCAACCAAGA CAGATCGCGA
    TTTGGTTTCA AAATCGAAGA GCTCGTTGGA AAACAAAGCA GCTAGAGAAA
    GATTATGATA CTCTTAAACG ACAGTTTGAT GCACTTAAAG CCGAAAATGA
    TCTTCTTCAA ACTCATAATC AGAAACTCCA AGCTGAGGTA ATTAATCTCA
    TAATCCAACA AAAAAAAA

AT1G69780.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper protein family
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04450.1

Model type
Protein coding
Short Description
nudix hydrolase homolog 6
Curator Summary
Encodes a protein with NADH pyrophosphatase activity. Although this protein was also shown to have ADP-ribose diphosphatase activity in vitro, mutant analyses suggest that NUDX6 is involved in NADH metabolism in vivo.
Computational Description
nudix hydrolase homolog 6 (NUDT6); FUNCTIONS IN: hydrolase activity, ADP-ribose diphosphatase activity, NAD or NADH binding, NADH pyrophosphatase activity; INVOLVED IN: response to other organism, positive regulation of salicylic acid mediated signaling pathway; LOCATED IN: cytosol; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), Nudix hydrolase 6-like (InterPro:IPR003293), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: MutT/nudix family protein (TAIR:AT4G12720.3); Has 2998 Blast hits to 2996 proteins in 719 species: Archae - 33; Bacteria - 1649; Metazoa - 236; Fungi - 25; Plants - 166; Viruses - 14; Other Eukaryotes - 875 (source: NCBI BLink).
Link
InterPro Scan - TAIR