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GT14500

CSHL Arabidopsis genetrap mutant lines

Original: GT14500

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14500

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 323445 [Map]; Strand: w
      • AT4G00753.1 - [+] show detail
        Distance: 412; Region: intergenic
      • AT4G00755.2 - [+] show detail - F-box family protein
        Distance: -1537; Region: intergenic
    Flanking Genome Sequence: GT14500 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTCATG 
    TCACTCTCTT CAAAGCTTCT TTAAAAAAAA TTATTATATA AAAACAAACT
    GAAATTCCTT TTGATAATTT TCAAAATTTA CAGTTATTGG TTTTCGTTTT
    ATTTACGTAT GCATGAATAA ATTTATCAAA CACATGAACT AAACCAAAAT
    AGAGGTGGTA TGAGAAAAGA ACAGGACTAA AAGAACTTTG TTCCTCGAAA
    AAAAGTTTGA ATTTCTTTAT TATGTAAGTA TTTTTTTTTA TCTTAGAAAT
    TCATCAAAAT ATCTTCCTCT TTTATTTTGA ACATGATACA CACAAATGTA
    AGAACCCAAA GAAGCCAAAA CATCTTTAAA TTAAACAAAA CAAAAAACAA
    AAACAAAAGA ACCTACAAAG AGACTTGGAC ATCTTTTAAT CCCAAACCAG
    ACCTAATCAT ACAATCATTC ATGATTTAAC TTGCGATATA CAAAGCTCCA
    TCTCCAACAC TTCACCACGT AATAAACTAT TAGGAACAAA CATGACATTT
    TTATCTTTAG GGGTTTCAAA ACTCACTTCA AGAATTCTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 224112 [Map]; Strand: w
      • AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
        Distance: 694; Region: intergenic
      • AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: 44; Region: intergenic
    Flanking Genome Sequence: GT14500 - 5-prime edge
    TCCTACTTTA TCCCTGAATG TCAGCATCGA ATGTCTCTCT CAGAGAGTCG 
    CATATAAAAT TGCAGTGGAA CAAGAAAAGA AAGAAGAAAG CATGTGAACA
    AGTAGAAAAA CATCAATTAC TAACAAACAT CTAATTAATA TATATTCCTT
    ACATTGACAA GGAACCATCG AAGCTTTCAG TTTCACTTTC AGACATATGT
    ATAGATAGTT GCAACTCCAA ACCCAAGCCC CAACATGGTC CACCTTCTCA
    TTTGGGTAAT AACTAACAAT AATAATCTTC AAACGCTCCT ATATAACATT
    TACTACACGT CTCCATCTTC AAACGCTTCT CTTCTATTAT AAGAACACAT
    CACTTACCAT TCGTGGACAA AACAACAAAT AAAACCTTCA TTAAAGTCCT
    ATTTATTATT CACACATGGG TTTTTTGTTT CAGTTCTTCA GAGGCATGAA
    CTCGTAGTAG TAACAGTAGT TGCATGCTTT CGTCTTCTCT ATCAACCGGC
    CTGTTTTCTC TTGGTACTCC CTAACCGGAA AGAGATTTAA AGGCC

AT2G01490.1

Model type
Protein coding
Short Description
phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description
phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01500.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Curator Summary
PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description
PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00753.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G37890; seven in absentia (SINA) protein, putative
Link
InterPro Scan - TAIR

AT4G00755.2

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 80 Blast hits to 80 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR