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GT14516

CSHL Arabidopsis genetrap mutant lines

Original: GT14516

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14516

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 395815 [Map]; Strand: w
      • AT1G02120.1 - [+] show detail - GRAM domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14516 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTTCAT 
    GGTTCCTCGA GAGAAGGTCG ACGCTCCCCG AAACGGAAGC AGTAGAAAGC
    ATCGCCATGT TTAGAGAGAG AAAGGGGAAA GTGTTGTTGT TTGCTGTTTG
    GCGGTCGTTG GGTGCGGCGT ACGATGTCAA CGTCAACGGC CATTGAGTCA
    AAAACGAACG ATCGGCCTCT TTTGGGCTCT CACTTTCTTG GCCCATTTCT
    TACCCTTGTA TTCAATTTGG CGGGCCACCT TTGGGCCATT AGTTAGGTGC
    CGTGTCTGCT CATGTATTAA ATGAGAAAGA TTGTGAGTCC TCACAAAACC
    ACAAGACTCA ATTTAATCAA TCCTCAAATT TACATGATAC CAACGTAATG
    AGAGCTTAAA AATAAATGAG AAACTTGGAC ATAATCAGTT GATGGAGTAG
    GAACGAGAAC AGACAGTCTG GAGAGATTCA GTGAAGAGAG ATGAGAAGCT
    GGTCAAGGCC TGGAATACAT TGGGCAGGCC GGTTTGTAGA TTGTTGAGAG
    TCATAGCTCG TGT

AT1G02120.1

Model type
Protein coding
Short Description
GRAM domain family protein
Curator Summary
Encodes VAD1 (Vascular Associated Death1), a regulator of cell death and defense responses in vascular tissues. VAD1 is a putative membrane associated protein and contains a GRAM domain. vad1 is a lesion mimic mutant that exhibits light conditional appearance of propagative HR (hypersensitive response)-like lesions along the vascular system.
Computational Description
VASCULAR ASSOCIATED DEATH1 (VAD1); INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: C2 domain-containing protein / GRAM domain-containing protein (TAIR:AT3G59660.1); Has 1155 Blast hits to 1034 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 619; Fungi - 222; Plants - 157; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link
InterPro Scan - TAIR