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GT14517

CSHL Arabidopsis genetrap mutant lines

Original: GT14517

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14517

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8176106 [Map]; Strand: c
      • AT1G23070.1 - [+] show detail - Protein of unknown function (DUF300)
        Distance: -287; Region: promoter
    Flanking Genome Sequence: GT14517 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCCAAGA 
    AAGGCAAATT AGAGAAATTT ATCAGAAGAT TTGGGGTCTT AAAAAAGAAA 
    TAGAACCAAA ATCATACCAT AATAAGTTGT CGTTGTTGTG TCATTAGTTA 
    TTTGGGTTTA TGTATGCGTA CGTGTCTAAG TTGTCTATGA TGTATGTATT 
    CTTTAAAGAT TAGTTTTACG TGTTATCTAT CATGGAGCCT TAATGGATTG 
    GGGAGAAGGC CCAAACATGA TGAAGGCCCA ATCTGTAACA AATTGTCACG 
    TCTTGAAAGT TGAAACACTG GTGTGGACCG TGTTGTGATA TCTTCTTATG 
    AATTATTTAT ACTACGTCTA AATAATCTTG AGAAGAAATA AGAAGAGAAG 
    CAACCAAATG ATGAGTATGA GATTTTTCGT AGATTTAAGT ATATAAGCTA 
    ATTTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 330175 [Map]; Strand: w
      • AT3G01990.1 - [+] show detail - ACT domain repeat 6
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14517 - 5-prime edge 
    CTTTATCCCT GGTTCCGGTG GCCTACCATT TTTATCCTCC TTCAACTTCC 
    CTCTCCCTCT CTCTTTTAGG AATTTTCCTC AGAAATTGGA GGACTCACAC 
    TCTTCTGGGT TTCTGCTGCA GCCAAATCAC CAAGGAGATA CATACTACAA 
    CCATGGATGA TGATGAATAT GCCAAGCTCA TCAGGAGAAT GAATCCTCCC 
    AGGTTTTTCT CTTTCTCTCC ATACTCTTTT ATTGTTTTCT AGGTCCTCTG 
    TTTCTCCATG CTCCGTTTGT GAGCCTCTAT ACCCTTGTAA AGATTCCAGC 
    TGCTAAAACA TTCATCTTTA TTTATGTATG TTTCATGGTG GATACAGAGT 
    TGTAATAGAC AACAACGCAA GCGACGATGC CACTGTTATT CAGGTAAATA 
    AATCTGTCTC TTCAAATTGT TCAAGTGGTT CTGTACCAAA CAAAGAGATT 
    TTGAGAAAAC AGAGTTCCCT GTTTGTTTGT GGTGCTAAAT AAAAGGTTGA 
    TAGTGTGAAC AAACATGGGA CTCTATTGGA AGTAGTACAA GTGCTCACTG 
    ATATGAATCT TGTGATCAAG AAAGCTTACA TCTCTTCCGA TGGAGGTTGG 
    TTCATGGACG TTTTCAAAGT CATCGACCAA GATGGCAATA AGATCAGAGA 
    CACTCAAGTC CTTGACTATA TCCAAAAGGT TTCTAATGTA TTTCATCACT 
    TTTTTTCTTT CATTT

AT1G23070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF300)
Computational Description
Protein of unknown function (DUF300); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT4G38360.2); Has 840 Blast hits to 837 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 286; Fungi - 190; Plants - 245; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01990.1

Model type
Protein coding
Short Description
ACT domain repeat 6
Curator Summary
Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding.
Computational Description
ACT domain repeat 6 (ACR6); FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 4 (TAIR:AT1G69040.1); Has 3173 Blast hits to 1993 proteins in 619 species: Archae - 0; Bacteria - 2121; Metazoa - 0; Fungi - 0; Plants - 561; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink).
Link
InterPro Scan - TAIR