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GT14518

CSHL Arabidopsis genetrap mutant lines

Original: GT14518

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14518

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 351444 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 1265; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 2013; Region: intergenic
    Flanking Genome Sequence: GT14518 - 3-prime edge 
    TTTTACCGAC CGTTACCTGA CCGTTTTCAT CCCTAGCGTA TCTTTGTCTT 
    GAACAAAAAT GAAATTAAAC AAAACCAAAA CAATACCATA ATCATCTTTA 
    AAACCAACTC AACAAAAAAA TAAATAATCT TTAATCATAT AGCATCCTCG 
    TCTTATGGCT GGATCACTGT TCTTGATAAT TATTGAGTCG CATTATCAAG 
    CCAAAAAAAA TCAATAATAG ATAAAGAAGA ATGATGGTCA TAATGTTTTG 
    GCAGCAAAAT CCACTTTAGA AAATTAGAAT ATCAAATAGA AGTAAAAGTA 
    ATGCAGGAAA AAAAAACTAT TAATTGGGTA TGATTATGGC AGACAAAAAG 
    TTAAGAATAA AAGAGGAATG TTGTGAGCCA ATTGGAGGAT ATATATCACA 
    CATTTAACTG ACGGAGACGA GAGAATAATA ATAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 351541 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 1362; Region: intergenic
      • AT2G01818.1 - [+] show detail - PLATZ transcription factor family protein
        Distance: 1916; Region: intergenic
    Flanking Genome Sequence: GT14518 - 5-prime edge 
    TCTCTGGCCC CAATAAACGC TCCATGTTGA CTAGTGAGCC CCAAGTGGAC 
    AATATTTATT TATCTTGATT TGTAAAATAT TTTATTCTTT CTAACTAACA 
    CAATTAAGAA ATTTTCTCAT CAAAATATCT TTAAATAAAA ATTTATGTAT 
    TACATAATAT TAAAAGCAAG TATATGTTCA TCTTTTTATT AGAGTTTTCA 
    GCTAGGGGCG GGCATTCGGG TAAGCGGGTT GGATTCGGGT AAAACCCGAT 
    CGGGTACGAG TATTTTGGGT ACAAAAGCTT AGAATCTAAT AAGATAAATC 
    TAAAATATCG GGTTGGTTTC GATTCGGATC TAATCGGATT CGAGTCGGTT 
    CGGATATAGA TTTTTGGGCC TAAATTGGAA CCAATACCCG AATTTTTGGA 
    TAAATACCCA GATTTTTCAG GTAAATACCC GGATTTTCGG GTAAAATTTC 
    GGGTTTCGGG TAAAATTTAG ATTTTCGGGT ATTTTTGGAT TCGGGTCGGG 
    TTTGGATTCG GTTTTTTGGG TAGAGGAATT TAGGATCCAA TAAGGTAAAT 
    TTTGGATTGG GGTTCGGTTT CGAATCCAAT TTTTCAGATC GATTTCGGTT 
    CGGGTTCTCG GTTCCGGATT TTTTGCCCAG TCCTATTTTC AGCTTTGTAA 
    TTAAATAAAC AAATTT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01818.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT3G60670.1); Has 397 Blast hits to 397 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR