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GT14521

CSHL Arabidopsis genetrap mutant lines

Original: GT14521

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14521

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22896877 [Map]; Strand: c
      • AT3G61850.1 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G61850.4 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G61850.2 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G61850.3 - [+] show detail - Dof-type zinc finger DNA-binding family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT14521 - 3-prime edge 
    GAGGCATGAA CACGTTCTTG CCTGGTCAAA TGATGGATTC AAACTCAGTC 
    CTGTACTCAT CTTTAGGGTT TCCAACAATG CCTGGATACA AACAGAGTAA 
    TAACAACCTT TCATTCTCCA TTGATCATCA TCAAGGGATT GGACATAACA 
    CCATCAACAG GAACCAAAGA GCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8948624 [Map]; Strand: w
      • AT2G20780.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G20784.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -997; Region: promoter
    Flanking Genome Sequence: GT14521 - 5-prime edge 
    TCCTACTTTC TCCCTGTGTA GACAGGAGCG ATCATGACAC CAAGCCCAAT 
    CCCAATGCCG GCTAAAGTTC TCCCTATCAT CAAAACCTCG AAAGACGGAG 
    CGACAGCCAT CACGGCAGCA CCAGTCTGGA AGACGAGAGC AGCCAAGGCC 
    ATGGTCCATT TTCTACCGAT AGAGTCAGAG GTTCTGCCGC CGGCTAAGCT 
    GCCAAAGAGT GAGATGATGC TAAGGCTACC AATGAGCACT TCCGTCTGCA 
    CCTCCGTTAT TTTGAGATCC TGCTGTATGA ACAACACCGC ACCGCTCATT 
    ACCCCAACAT CTGACAAATA CCAAAAACAG AGCACACACA CCTTTTTGTA 
    AGTCAACAAA GTAAAGAAGA AGAAGAAGAA TCCGATTATA TAAGTAAAAC 
    CGACCGTAGC CGAGAAGAAC ATTGTTCAAG GATGCAAAAA AGGCACAAGC 
    CATAACGTAT TTTCTGGTTC TACTGTTTCT AGCCTCTGCT TCACGATGAT 
    TCTGCGATTC CTCCGCGTCG GAGTCCATTC TCTGATACTT ATTCT

AT2G20780.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: polyol/monosaccharide transporter 5 (TAIR:AT3G18830.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20784.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.1

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 1148 Blast hits to 1141 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.2

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.3

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.1); Has 1143 Blast hits to 1136 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1095; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61850.4

Model type
Protein coding
Short Description
Dof-type zinc finger DNA-binding family protein
Curator Summary
Zinc finger transcription factor of the Dof family involved in the control of seed germination.
Computational Description
dof affecting germination 1 (DAG1); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT2G46590.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR