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GT14528

CSHL Arabidopsis genetrap mutant lines

Original: GT14528

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14528

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 672635 [Map]; Strand: c
      • AT2G02500.1 - [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G02510.1 - [+] show detail - NADH dehydrogenase (ubiquinone)s
        Distance: -670; Region: promoter
    Flanking Genome Sequence: GT14528 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTCCA GCTAAAAGAA 
    TCACAGATAC ACTCCTTCTC CTTCACAACA ACATTGCTCT GAAAAACATA 
    AGAGATAAAA AAAAAGCTTC AAAATTTGAG TTGATTCAAA ACTTTAAACT 
    TACATTCACA GCATTGCTCT GAAAAACAAA AAAAACTTAA ACTAGAGATA 
    AAGCTTCAAA ACTAAGTGAT TCCAAGTTTT GAACTAACAC TTACATTATC 
    AAATCCAGTC GATGAAGAAC ACTTGATTGA CAATAATAAA GCATCTCTTT 
    TGTAGCTTCT ATTAACCCTT TTCGAAAAAT CCAGTTTTTG AACTGAAAAA 
    TCAACATTCA GAAACAATCA AAAATCTCCT CACCGAACCA GAGATTCATT 
    GGTTTGAACG TATATAAAGA GTATGAGAAA TTGCCTTGAG AACGATAGCT 
    AAACCCCAGA TAAGAGTTCA ATTTGACTTT AAGCTTCGGA CACAGAAATG 
    TCGGAGAAGT AATGAAGCCA AGATTCGTCT GAAGCATCGC CATGTTTTAT 
    CTCGCCTGAG AGAAGAAGAA AGCTCCGGTT CCTCGGAGAA CCAATATATA 
    TATAAGGCCA ACTAAAAACA ATAAGCCCAT CAGGCCCATT AAAAACTCAG 
    TAATACTAAT GGGCTTTTAA TAAGGCCCAT AATTCAATAC AGTAAAACAA 
    CACAACAAAG CTAAAGAGAA AGAAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5459857 [Map]; Strand: w
      • AT3G16100.1 - [+] show detail - RAB GTPase homolog G3C
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT14528 - 5-prime edge 
    AATACAGATA GAAATAAAGT AATTTGTTTT CCCATTGTAG ATTTGGGATA 
    CTGCAGGGCA AGAGAGGTTC CAAAGTTTGG GTGTTGCTTT CTACCGAGGA 
    GCGGACTGTT GTGTTCTTGT GAATGATGTC AATGTTATGA AATCCTTTGA 
    AAATCTTAAC AACTGGAGGG AAGAGTTCCT GATCCAGGTT CGAACACATA 
    TCACTGATTT TTCTCGATTA TTTTCTGTCA TATCATATCA GTGATTGATT 
    AATATCTTTA TTGATTTGTT TAGGCTAGTC CTTCAGATCC TGAAAACTTC 
    CCCTTCGTTG TCTTGGGGAA CAAGACAGAT GTTGACGGTG GAAAGAGTCG 
    AGTGGTAATA ACGCCTTTCT TTTCGTTTTC TCTCAAGTTA GTAAGAATG

AT2G02500.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity).
Computational Description
ISPD; FUNCTIONS IN: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity; INVOLVED IN: response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast, chloroplast stroma, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase (InterPro:IPR001228), 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site (InterPro:IPR018294); Has 6821 Blast hits to 6815 proteins in 2244 species: Archae - 30; Bacteria - 4964; Metazoa - 52; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 1708 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02510.1

Model type
Protein coding
Short Description
NADH dehydrogenase (ubiquinone)s
Computational Description
NADH dehydrogenase (ubiquinone)s; FUNCTIONS IN: NADH dehydrogenase (ubiquinone) activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADH:ubiquinone oxidoreductase, B12 subunit (InterPro:IPR012576); BEST Arabidopsis thaliana protein match is: NADH dehydrogenase (ubiquinone)s (TAIR:AT1G14450.1); Has 55 Blast hits to 55 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 50; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16100.1

Model type
Protein coding
Short Description
RAB GTPase homolog G3C
Computational Description
RAB GTPase homolog G3C (RABG3c); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3D (TAIR:AT1G52280.1); Has 25544 Blast hits to 25522 proteins in 774 species: Archae - 27; Bacteria - 219; Metazoa - 13379; Fungi - 3488; Plants - 2822; Viruses - 20; Other Eukaryotes - 5589 (source: NCBI BLink).
Link
InterPro Scan - TAIR