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GT14531

CSHL Arabidopsis genetrap mutant lines

Original: GT14531

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14531

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 389867 [Map]; Strand: c
      • AT2G01860.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (3UTR)
      • AT2G01870.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14531 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTT 
    TCAGGCAAAG ATGAAAGTGG AAACTTAACA ATGTCAGAAT CAGACATAGC 
    AACACTGTTT TCTTCTGGAA CTGATTCTGG TCCATCCATG GATGGTTTTA 
    TCACTGTAAT GAACAAAATG TTGTAGAACA AGGTAAGAGC TAAGAGAACA 
    AAAGCTGAAC TTGTGAGGAA CGATCCGGAG ATCTCAGGTG GTTCTTCAAA 
    CATGATTGGA TCATTGTTGG TTCTGACCAC ATCTGATGAT GTCTTGTTGA 
    TGATTCTTGG TTTCTCATCA GCTTGAGATT CTATTTGTTG ATCAAGCTGT 
    TTCAGAGCTT CTCTAGCTTT ATCTCTATCG ATTTGGAATG AATCTTCTCT 
    TTCAGTGGCT TGGACAATAC GCATCAAATG TCTCTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2688705 [Map]; Strand: c
      • AT1G08490.1 - [+] show detail - chloroplastic NIFS-like cysteine desulfurase
        Distance: -110; Region: promoter
      • AT1G08500.1 - [+] show detail - early nodulin-like protein 18
        Distance: -311; Region: promoter
    Flanking Genome Sequence: GT14531 - 5-prime edge 
    TTTTTCTACT AAATGGAGGA TATTTTAGAT AACGTGTTTT GTAGTGTTTC 
    AAAGTCGGTT GAACCGGTAT TTAACCGGTT TGATTGGACC TTAAAAACCA 
    AGGGCCCATT TAATGGAGTA AAAGGCCTAA TTCGGCCCAT ATCTTTAGAT 
    GAAATTAATC TTTTGACCGC CGCCTGTGGT CGAACTTGTG ACTTTGAAGA 
    CTCACTCTTG TTCATTCGTC TTCTCCACCA TGGAAGGTGT GGCTATGAAA 
    CTCCCGTCGT TCCCTAACGC CATCTCCATC GGCCACCGGA GCTTCTCCCG 
    CGTTCGTTGC TCCTCTTCGC TATCCGTTTG TTCCGCCGCC GCCGCTTCCT 
    CCGCCACCAT CTCCACTGAT TCCGAATTCA TC

AT1G08490.1

Model type
Protein coding
Short Description
chloroplastic NIFS-like cysteine desulfurase
Curator Summary
Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation.
Computational Description
chloroplastic NIFS-like cysteine desulfurase (CPNIFS); FUNCTIONS IN: transaminase activity, selenocysteine lyase activity, cysteine desulfurase activity; INVOLVED IN: iron incorporation into metallo-sulfur cluster, response to selenium ion, sulfur metabolic process, selenium metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Cysteine desulfurase, SufS (InterPro:IPR010970), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: nitrogen fixation S (NIFS)-like 1 (TAIR:AT5G65720.1); Has 22660 Blast hits to 22653 proteins in 2897 species: Archae - 350; Bacteria - 15408; Metazoa - 379; Fungi - 404; Plants - 268; Viruses - 1; Other Eukaryotes - 5850 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G08500.1

Model type
Protein coding
Short Description
early nodulin-like protein 18
Computational Description
early nodulin-like protein 18 (ENODL18); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT2G31050.1); Has 799 Blast hits to 788 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 799; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01860.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
EMBRYO DEFECTIVE 975 (EMB975); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: LATERAL ORGAN JUNCTION (TAIR:AT2G39230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01870.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR