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GT14535

CSHL Arabidopsis genetrap mutant lines

Original: GT14535

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14535

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20367832 [Map]; Strand: c
      • AT3G54960.1 - [+] show detail - PDI-like 1-3
        Distance: -992; Region: promoter
      • AT3G54960.2 - [+] show detail - PDI-like 1-3
        Distance: -992; Region: promoter
    Flanking Genome Sequence: GT14535 - 5-prime edge 
    TCCTACTTTC TCCCTGCTTG TAGTGGAGGA AATAGAAATT TGGAGGACAC 
    AAAATTTTCC CCCTTTTTTT TTTTTTTCCC GAAAAAAAAA TTTTTTTTTT 
    CCCAAAAAAA AATTTAGGGG TTTTTAACCC CCTTTTTTTT TCCCCCAAAA 
    AAAATTTTTG GGTTTTTAAA AAAAAAAAGG GGGGGGGGGA ACCCCCCCTG 
    GGCAAAATTT TAAAACTTTT TAAAAAAAGG AAAACCCCCT TTTTTGCCCC 
    CCCGGGTTTT TGGGAATTTT TGGAAAAAAA ATTTCCCCCC GGAAAAAAAA 
    AAAAAACCCC CCCCCCCCGG GGGGGAATTT TTTTTTTTTT TCCCCCAAAA 
    AAACCCCCCC CCCCTTTTTT TGGCCCCCCC CAAAAAAAGG GGGGGGGGGG 
    AAAAAACTTT TTTTTTTTGG GGGAAAGGGG GAAAAAAAAA AAAAGGGGGG 
    GGGAAACCCC CCCAAAGGGG GGGGGCCCCC CCCAAAAAAC CCCAAAAATG 
    GGGGGGGCCC CCCCCCCAAT TGGCCCAAAA AAAAAAGGCC CCCCCCCTTA 
    AGGGGCCCCC AAAAAAAA

AT3G54960.1

Model type
Protein coding
Short Description
PDI-like 1-3
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-3 (PDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-4 (TAIR:AT5G60640.1); Has 26348 Blast hits to 17789 proteins in 2915 species: Archae - 261; Bacteria - 12527; Metazoa - 4679; Fungi - 1534; Plants - 2199; Viruses - 17; Other Eukaryotes - 5131 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54960.2

Model type
Protein coding
Short Description
PDI-like 1-3
Curator Summary
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). Neither AtIRE1-2 nor AtbZIP60 appear to be required for this response.
Computational Description
PDI-like 1-3 (PDIL1-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-4 (TAIR:AT5G60640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR