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GT14541

CSHL Arabidopsis genetrap mutant lines

Original: GT14541

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14541

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19360847 [Map]; Strand: c
      • AT2G47160.1 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47160.2 - [+] show detail - HCO3- transporter family
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14541 - 5-prime edge
    CTTTATCCCT GATGGGTTTT TCCGGTTTAA AGTAGTTGTA TCTTTGTTTC 
    CCCTTTAAAC CGGGTTTAAG CTCAATCTTT TCTTAGAACA ACTCCAACTG
    TTTGACGATT TGACTGAGAG AAAACAGAGT CATGGAAGAG ACTTTTGTGC
    CGTTTGAAGG AATCAAGAAT GATCTTAAAG GAAGATTGAT GTGCTATAAG
    CAAGATTGGA CTGGTGGATT CAAAGCTGGA TTTAGGTACT AAACTAATCT
    AAAAATAATG AATCTTCATT GATTGATATT TTAACCTCTC TTTTTGATTC
    AATTGCCTAG GATTCTGGCT CCCACCACTT ACATATTTTT CGCTTCTGCG
    ATTCCTGTCA TCTCATTTGG TGAACAACTC GAAAGAAGCA CCGGTAATTC
    TGAAAAAAGT TTCTACCTTG CACTTTTTCA GCTTAGGAAT TTGAAATTGG
    ATTCTGAAAT TTTTGCAGAT GGAGTTCTCA CG

AT2G47160.1

Model type
Protein coding
Short Description
HCO3- transporter family
Curator Summary
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.
Computational Description
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2647 Blast hits to 1412 proteins in 196 species: Archae - 0; Bacteria - 8; Metazoa - 1975; Fungi - 323; Plants - 233; Viruses - 2; Other Eukaryotes - 106 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47160.2

Model type
Protein coding
Short Description
HCO3- transporter family
Curator Summary
Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Localized to the inner plasma membrane domain in the columella, lateral root cap, epidermis, and endodermis in the root tip region, and in the epidermis and endodermis in the elongation zone. Under high-boron is transported to the vacuole for degradation.
Computational Description
REQUIRES HIGH BORON 1 (BOR1); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2632 Blast hits to 1400 proteins in 192 species: Archae - 0; Bacteria - 6; Metazoa - 1971; Fungi - 316; Plants - 233; Viruses - 2; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR