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GT14549

CSHL Arabidopsis genetrap mutant lines

Original: GT14549

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14549

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 323486 [Map]; Strand: c
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 317; Region: intergenic
      • AT5G01840.1 - [+] show detail - ovate family protein 1
        Distance: -1066; Region: intergenic
    Flanking Genome Sequence: GT14549 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTATTTCG 
    AAGCATTAAA TAAAATATCT TCTTCTTCCT TGCCCTCTTT TTTAAACGGT
    TAATTTTATT ACAGAACTAT TACAAAACCA GAAAACACAT TTGAGGAAAA
    GAGTGACGGT GTTGAGAATT TATGAAGCGG AGTGAGAGAC AAGAAATATG
    TTCAAACCAA AGAGTGAGGT TGGAGTTTTT CATCGAAGCA GAGTAGTTGA
    TGTTTAAGGA AAAGCTGTTC TGTAACTTTT TACAACCATC AGTTAACCAT
    GGCAGAGAAC AAATACATAG AGATGTAACG TGTTATTTTT TTTTTTTTTT
    GGAGCGGGTA AAAAAGGCCC TAAAAAAAGG GGGCAAATTG GGGCCCCGGA
    AAAATAATAT TTTGGGGTTC AAATTGGAGA AATTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 323426 [Map]; Strand: c
      • AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 257; Region: intergenic
      • AT5G01840.1 - [+] show detail - ovate family protein 1
        Distance: -1126; Region: intergenic
    Flanking Genome Sequence: GT14549 - 5-prime edge
    CTTTCTCCCT GCTTCGAAAG ACCAAAACGT AAAAACAACA ACAAACAAAA 
    AGGTTTGCTT CTCTAGGAAG AAAGATTGTT GCTATTTGCA ATCAGTTCCA
    TTTCCAATCA TCATCACTCC TTTAGGAACA TGCTTGTGTG TATATCTCTT
    GTGGATTTGC TCTGTCTTTT GTGTTGAAAT TTTGTGCCAA TTCTTTTGTC
    TCTTTATTCA CACACATATG ATAACTCTAA TATGCTTTCA AGATTTTTAT
    TAGTTCCTGT CAAAACACTA GTTATGAGTT ATGAGAGATT AGTAAACAAC
    ATCATAACAC TGTGTAAAGT TCATCCAGTA AAAGGGAAAA AATCTCTCGT
    TCA

AT5G01830.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01840.1

Model type
Protein coding
Short Description
ovate family protein 1
Curator Summary
Encodes a member of the plant specific ovate protein family. Members of this family have been shown to bind to KNOX and BELL- like TALE class homeodomain proteins. This interaction may mediate relocalization of the TALE homeodomain from the nucleus to the cytoplasm. Functions as a transcriptional repressor that suppresses cell elongation.
Computational Description
ovate family protein 1 (OFP1); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: N-terminal protein myristoylation, regulation of unidimensional cell growth; LOCATED IN: nucleolus, cytoskeleton; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: ovate family protein 3 (TAIR:AT5G58360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR