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GT14566

CSHL Arabidopsis genetrap mutant lines

Original: GT14566

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14566

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19473746 [Map]; Strand: c
      • AT2G47450.1 - [+] show detail - chloroplast signal recognition particle component (CAO)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14566 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTA 
    GCGGAGAGTG TGATCGGGAA GAGGGTGGGA GACGATGGGA AGACCATCGA 
    GTATCTTGTC AAATGGACTG ATATGTCTGA TGCCACTTGG GAGCCTCAGG 
    ACAATGTCGA CTCTACTCTT GTTCTACTCT ACCAACAACA ACAACCAATG 
    AATGAATGAT TGATTTTGAT GATTACATTC ATCTCACTCG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19473668 [Map]; Strand: c
      • AT2G47450.1 - [+] show detail - chloroplast signal recognition particle component (CAO)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14566 - 5-prime edge 
    GCGTACTCCA GCCCATCCTC GTAGTCCTTA GCCACATCTT CCGCCACGTG 
    TACACCTTTC ATCCACTTCG AATATCCACC GTCCTTCCAT CTGACCAGAT 
    ATTCAACGTC TTTGCCTTTC CCTCGTTTCT CTACGATCTC

AT2G47450.1

Model type
Protein coding
Short Description
chloroplast signal recognition particle component (CAO)
Curator Summary
A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1.
Computational Description
CHAOS (CAO); FUNCTIONS IN: chromatin binding; INVOLVED IN: response to high light intensity, protein import into chloroplast thylakoid membrane; LOCATED IN: chloroplast thylakoid membrane, chloroplast, signal recognition particle, chloroplast targeting, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Chromo domain-like (InterPro:IPR016197), Chromo domain (InterPro:IPR000953), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing protein 2 (TAIR:AT4G35450.5); Has 25373 Blast hits to 13489 proteins in 848 species: Archae - 87; Bacteria - 2575; Metazoa - 11620; Fungi - 2006; Plants - 1049; Viruses - 137; Other Eukaryotes - 7899 (source: NCBI BLink).
Link
InterPro Scan - TAIR