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GT14571

CSHL Arabidopsis genetrap mutant lines

Original: GT14571

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14571

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25568710 [Map]; Strand: c
      • AT5G63890.1 - [+] show detail - histidinol dehydrogenase
        Distance: -687; Region: promoter
      • AT5G63890.2 - [+] show detail - histidinol dehydrogenase
        Distance: -504; Region: promoter
      • AT5G63900.1 - [+] show detail - Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14571 - 5-prime edge
    CACTTTCTCC CTGGTCGAAA GCCACTCTTC GATGGCTCCT GGACTTAGCT 
    CTGCTTCCAT CGGAACAATA TCACACGAAT TCATTCTTCA AGGAAACACG
    ACTCTCGCTT ATCGACTAGG GTTTTAGGCA CATATAAGGT TCGAGAAAAA
    TAAGGAAATT TTCCCTTAAA CAAAGGGAAC AAATCTTATA AAGATTTTAT
    CAGTTTTAAA TCTGTTGAAT ATTTTTTCCA AATATTAAAT TAAAAAAATG
    GAAAACGTGA TGCGAAAGTA TCTGGAAAAA TAGAAATTTG ATTAGAATGT
    TAATTCCTAT ACATTAAGAA GTACGTGGGC CTTTGGCTCA TAAACGTTTT
    CGAAAAATAT TTATACAGAA AGGCCCATTC TTGTGGAAAA ATATAGAATT
    AGGCCCATAA TTTCTTGTTA GTAGTGTTAA ATATGGCGAA AATATTAATA
    TATAAGAAAA TTAGAATATG CTTCAGTAAA GGCCCAATTA TTTTTTTAGC
    GGTGCAGATG AATGGGCTTT ATGGGGCCTT ATTGGGTTTG TAAACCTTGG
    ACGTTTTAAG GCCTTTATTA TCG

AT5G63890.1

Model type
Protein coding
Short Description
histidinol dehydrogenase
Curator Summary
Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.
Computational Description
histidinol dehydrogenase (HDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 9090 Blast hits to 9090 proteins in 2188 species: Archae - 179; Bacteria - 4137; Metazoa - 4; Fungi - 211; Plants - 72; Viruses - 0; Other Eukaryotes - 4487 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63890.2

Model type
Protein coding
Short Description
histidinol dehydrogenase
Curator Summary
Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.
Computational Description
histidinol dehydrogenase (HDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 9146 Blast hits to 9146 proteins in 2211 species: Archae - 179; Bacteria - 4194; Metazoa - 4; Fungi - 211; Plants - 72; Viruses - 0; Other Eukaryotes - 4486 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63900.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain
Computational Description
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding, N-acetyltransferase activity; INVOLVED IN: regulation of transcription, DNA-dependent, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: leaf lamina base, leaf whorl, flower, leaf, seed; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase (InterPro:IPR000182), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger transcription factor, putative (TAIR:AT5G58610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR