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GT14576

CSHL Arabidopsis genetrap mutant lines

Original: GT14576

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14576

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22223333 [Map]; Strand: w
      • AT3G60150.1 - [+] show detail - Protein of unknown function (DUF498/DUF598)
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT14576 - 3-prime edge 
    CGTTTTCATC CCTAATTCCA GAGGTGTTGA GTTTCTTACG ATGTAACTCC 
    ATAAGGAAGC AATGCAGCAG CCACGATCCT GCCTTCCTCA TTGAGTATGT 
    TGTAAGTTGA TGCAGCATTT CTCTGGATAG ATCAGAGCGT TAATCAATAA 
    GCACAGAAAA ATACTCCAAA CCAACAGAAC AAATACTTGA ATAGAACAAA 
    GGACATACAG AATCAACAGT TTCTAGCTTC TGCTCGCTCG ACTATACGAA 
    CTGACGGACT TGGGGATTCA GTGGGTGGTT GTATCTTCCA CACCCGACAA 
    TCAAGAGCTC TAGAGATTGT TTTGAAAAAA AAAAACCAAA AAAGGGGGGG 
    CCAAAACCCC CGGAGGATCC CCTTCAAAAG GGGCAAAAGG TTTTTCCTTT 
    TTACCCCCAA AAAATAGGGG GAACGCAAAC GTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21124613 [Map]; Strand: w
      • AT1G56420.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -379; Region: promoter
    Flanking Genome Sequence: GT14576 - 5-prime edge 
    TCCTACTTTC TCCCTGTCTG GAAACTGTAG AACAAACTTC GAACAGCTTG 
    ACTCGATCTT TATAGTTGAA ACACCAACAT GGTCTTCTTG TCTACTGTAA 
    ATGATATATT TCACTCTATT TGTAAAACTT TTGCAAAAAA ATCGAAATTT 
    ACAGGATTAC CACCTTGTTA CGTAGCTTTA ATTTGATTGA GCTTTATCTG 
    AAAAATAGAA GATATAGATG TTAGGGGTTA GATTTGGGCT TGCTTTTCCC 
    AAGGCCCAAA TCCAAGTCAA AGGCCTAAGC AGAATGTTAA GTCAAGAGGG 
    TAGGCTCGTC AAAACCCTGG AGGAATGCCC TACACGCAGA AGGCTATAAA 
    TACGGAATAG CATGTCTTGT CAAAGGGGAT TCCAGGAGGA CACTTAGAAA 
    CAAAGAGAAG CTCGTCAGCT CTCCCGTCTA ACCAGCTCGT CAGCTCTCCC 
    GTCTAACCAG CTCGTCAGCT CTCCCGTCTG AAGCATCTCG TCAGCCGGTC 
    CGTCTCAAGT AGCTCACCAG TTCGCCCGTC TCAACCAGCT CGTCAGCTCA 
    CCCGTCCGAA GTATCTCGTC AGCCGGTCCG CCTCAAGTAG CTCATCCG

AT1G56420.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60150.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF498/DUF598)
Computational Description
Protein of unknown function (DUF498/DUF598); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF498 (InterPro:IPR007523); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF498/DUF598) (TAIR:AT2G44525.1); Has 753 Blast hits to 753 proteins in 341 species: Archae - 0; Bacteria - 405; Metazoa - 118; Fungi - 87; Plants - 61; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR