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GT14579

CSHL Arabidopsis genetrap mutant lines

Original: GT14579

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14579

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14579 - 5-prime edge 
    AAACGTTCAC AAACGCCACC ACTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569264 [Map]; Strand: c
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 336; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1866; Region: intergenic
    Flanking Genome Sequence: GT14579 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG GGAGGGAGAA TGGGTCCTCT TTCTTTATGA 
    AATAATTTAC CTTTCCTAGA TGATGTAAAC GTCTCAAACG CCACCACTAC 
    TCTGAAATCT CACATTTGTC AACGCCGTTG CAATTTAAAA AGATGATGAG 
    TTCCTACAAT GAATGTATCA ATCGGATTAG TCTTGATCAA GATCAAAGTT 
    TGACAGATAA ATCAAAGGAG ACAGCAAAAT TCAAATGAAT TTTACTTAAT 
    CAAGAACAAG TAACGCTCAC AGTCACAGAT AACAAAAAAG GTTAAAGTTT 
    CGAGATAATA CCTAGTTTTC TTCAAACTTA GATCTTAGTA GTATTCACCG 
    AATGATATTG ATCGCTATCT TTAT

AT1G76135.1

Model type
miRNA
Short Description
MIR394B; miRNA
Curator Summary
Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.
Link
InterPro Scan - TAIR

AT1G76140.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).
Link
InterPro Scan - TAIR