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GT14580

CSHL Arabidopsis genetrap mutant lines

Original: GT14580

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14580

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1529388 [Map]; Strand: c
      • AT4G03445.1 - [+] show detail - MIR447A; miRNA
        Distance: -1018; Region: intergenic
      • AT4G03450.1 - [+] show detail - Ankyrin repeat family protein
        Distance: 58; Region: intergenic
    Flanking Genome Sequence: GT14580 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCGAATC 
    AACATAGCAA CAGAAGCTCC ATTCTCTAGC TCTAGAGAGT CTCCACACAA 
    TATATTATGT ATTTTGACAA AATAGAGTAC ATGGAATGAT GGAAACCATA 
    AATAAAAACT CATAGATAAA TCACGAAACA CCGAAAAGCC AATAACGTTT 
    AAACAACATC TTAATCAAAC AGATGAAATG ATATTATTTC TTTAAAGACA 
    TTTTTTATTT TACCTTTCGA CTTAGTTCGC GACATAAAGA TGGACGGTCT 
    CCTGCTTCAT CTCACTCGAC A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28569257 [Map]; Strand: c
      • AT1G76135.1 - [+] show detail - MIR394B; miRNA
        Distance: 329; Region: intergenic
      • AT1G76140.1 - [+] show detail - Prolyl oligopeptidase family protein
        Distance: -1873; Region: intergenic
    Flanking Genome Sequence: GT14580 - 5-prime edge 
    ACTTTCTCCC TGGTAGGGAG TAATGGGTCC TCTTTCTTTA TGAAATAATT 
    TACCTTTCCT AGATGATGTA AACGTCTCAA ACGCCACCAC TACTCTGAAA 
    TCTCACATTT GTCAACGCCG TTGCAATTTA AAAAGATGAT GAGTTCCTAC 
    AATGAATGTA TCAATCGGAT TAGTCTTGAT CAAGATCAAA GTTTGACAGA 
    TAAATCAAAG GAGACAGCAA AATTCAAATG AATTTTACTT AATCAAGAAC 
    AAGTAACGCT CACAGTCACA GATAACAAAA AAGGTTAAAG TTTCGAGATA 
    ATACCTAGTT TTCTTCAAAC TTAGATCTTA GTAGTATTCA CCGAATGATA 
    TTGATCACTA TCTTTATATA TCAAATCATG AGGGGTTTTA CAAAGAAACC 
    CTAACAGATC TCTATTGGCA GTATGCCCAC CTCCTCTTAC AAAACACACC 
    GTAGATACGT ACACTTATTA CACATAAATA TAGAGAGAGG AGGTGGACAG 
    AATGCCAAAG ATCTCTGTAA GAGACTCTTT TGTCAAACCC GCATGATCAA 
    AAAGGTTAAA GATCCAAAAA CAAATCACTC ATTTCCTTTC TGTCGAATGT 
    AACATCGAGA GGTACACCTT AAGGAGCAAA AAGGGTTTTC TTTTAGATGG 
    AAAAAGATAG AGAGAGAGAG AGA

AT1G76135.1

Model type
miRNA
Short Description
MIR394B; miRNA
Curator Summary
Encodes a microRNA that targets one member of the F-box family. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGCAUUCUGUCCACCUCC. It targets F-box protein AT1g27340.
Link
InterPro Scan - TAIR

AT1G76140.1

Model type
Protein coding
Short Description
Prolyl oligopeptidase family protein
Computational Description
Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 8127 Blast hits to 8050 proteins in 1368 species: Archae - 105; Bacteria - 3923; Metazoa - 339; Fungi - 43; Plants - 244; Viruses - 0; Other Eukaryotes - 3473 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03445.1

Model type
miRNA
Short Description
MIR447A; miRNA
Curator Summary
Encodes a microRNA that targets several 2-phosphoglycerate kinase-related family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UUGGGGACGAGAUGUUUUGUUG
Link
InterPro Scan - TAIR

AT4G03450.1

Model type
Protein coding
Short Description
Ankyrin repeat family protein
Computational Description
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G03440.1); Has 22492 Blast hits to 11630 proteins in 488 species: Archae - 24; Bacteria - 1675; Metazoa - 12211; Fungi - 1719; Plants - 2554; Viruses - 43; Other Eukaryotes - 4266 (source: NCBI BLink).
Link
InterPro Scan - TAIR