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Mutant Lines
GT14587

GT14587

CSHL Arabidopsis genetrap mutant lines

Original: GT14587

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14587

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 11035 [Map]; Strand: c
- AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: -671; Region: promoter
- AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
  Distance: -580; Region: promoter

GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACTAAAC 
CTTTCAACTT TTTTGTGTTT TCTTTTCTTA ATTAAACACA AGATTAATTA 
GGAAATTTTG TGTTTCGTTC CGTTTCGTTT CGATTTCTGG TTTCTTGTTT 
CTATTACTCA AATTATTGCT CGAGTGTTAG GTTTGCTTGT ATCTATCCTT 
GTTTTTTCCG TGATTATGTA ATTTGATTGG CCCTTGTAGT CGAGATGTTT 
GTAGCCTTGA TGGCTCGGGG AAACTCAGAG AGAGAGTTGG TCCCGGTTGC 
ATTCTCCGCT GTCTTACTGA TACCATAAAC ACCGTTTGAT CCATGATTGC 
CTCTATTGTA TACTTGATGC TTCATGATAT ATGCATTCTC CATGTCTCTG 
TTTCTGTNCT ACGCACAAAA ATATTATCAA GCCTCAAACT TGAATTCGGT 
TCAAAATCCT AGACATCCCC AAGAGGATCA TAAACACAGT TTAGACTTGT 
TTTTCAATTA GCAAACAGTT GCTTGATAAG AAGTCATTCC TACAGCTCAT 
GTGTACCACA ATTCTCTCTC TTTTCTCCAA CACCCCAACT AAAACAATCT 
AAGCCGTTTC TGAATGTTTT CCGGATCTGC TGAGTCATAA ATACGAGTGC 
TTTAGG

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 10977 [Map]; Strand: c
  - AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -613; Region: promoter
  - AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
    Distance: -522; Region: promoter
Flanking Genome Sequence: GT14587 - 5-prime edge
```
CCTACTTTCA TCCTGGGTTT AGTGGTGCAT CCACGTAGCA AGACATTTTA 
GGTGTACGTC GACCATATTG TTGGCCGTTT ATAGAGCATC ATCCACTCTC 
CTCGACGAGC AAGATCATGC CGCCTCTGG
```

AT4G00020.1

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00020.2

Model type: Protein coding
Short Description: BREAST CANCER 2 like 2A
Curator Summary: Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description: BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link: InterPro Scan - TAIR