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GT14591

CSHL Arabidopsis genetrap mutant lines

Original: GT14591

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14591

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3338018 [Map]; Strand: c
      • AT1G10170.1 - [+] show detail - NF-X-like 1
        Distance: -527; Region: promoter
    Flanking Genome Sequence: GT14591 - 5-prime edge 
    TAATCTTCCT CATCGCTCCA TGGTCTCCTA CAGTCTCTTT CTCTCTCTCC 
    CTGAGAAAAC AAGGGAGACT AATCGGAATC TCCTGCGTAT TTGATTCTTC 
    CGGCGATTGT TTCCTTCTTT ATACGCTTTC GTATATTCAT CTCACTCGA

AT1G10170.1

Model type
Protein coding
Short Description
NF-X-like 1
Curator Summary
Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.
Computational Description
NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink).
Link
InterPro Scan - TAIR