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GT14603

CSHL Arabidopsis genetrap mutant lines

Original: GT14603

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14603

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8171595 [Map]; Strand: c
      • AT3G22990.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 5250; Region: intergenic
      • AT3G23000.1 - [+] show detail - CBL-interacting protein kinase 7
        Distance: -1002; Region: intergenic
    Flanking Genome Sequence: GT14603 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCATACAC 
    AATAAGATTC ATATAAGTTT ATGAAATCAA GGTTGTGATA TTGTTGTTAT 
    TGAGATCCAA AACTTAAAAT CCAAAATATG AGAACTTTTG GAGCATTGGG 
    TTATATAAAA TATATTTTTC TCAATCAAAT CTTTTTTTAG TTAACAACTT 
    TAAATTAATC GCAATAGAAT TATTCATGAA AAATGTTATT TACATATAAC 
    CCAATCCAAT GATTTCAAAA GAGATATTAT AGAATTTTGT AAAGCATTAA 
    AGATTTAACT AGATTTTGTT ATATAGACGC ATAATCATAA AACCTTTGAT 
    TCATAGTTTC ATTCTTATAA TGGTCTCTTA AGTATGAAGG TGTTGTAGCG 
    GAGACTAGAA ATATATATGA GGGTAATGTT TGTCTGTTGA GACACATTTT 
    TACAAGCTAT TAAAAAAAAT GATTCCAACA ATATTTATTG AAAGTAAATA 
    TATTTTATTA GGAGATTTTA AAATTAATGT CATATTCTAA AATGTACCAT 
    ATATACATTA TTTTTTGAAG ATTTTACAAT AAATTTCAAA GTGAAACTGA 
    AATGATTTTA TTAAATTTAT ATACATAACT CTTTGTGTTT TTTTGACAAT 
    CATATATATA ACTCTTAAAC ACAAGCTTTT ACAGAACATC TA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8151324 [Map]; Strand: c
      • AT3G22968.1 - [+] show detail - conserved peptide upstream open reading frame 59
        Distance: -714; Region: promoter
      • AT3G22970.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: -714; Region: promoter
      • AT3G22970.2 - [+] show detail - Protein of unknown function (DUF506)
        Distance: -714; Region: promoter
    Flanking Genome Sequence: GT14603 - 5-prime edge 
    TTCCATCCTA CTTTCATTTA AATCCAACCA TTAATCAAAA AGAAATTTAC 
    TAAAAATCAT GCAAAAGAAG GGGCCCCAAA TATTTGACCG TTTGGTCTAT 
    TCATATAAAG AAAAGTAAAA GTAAACAACA AAAATAAAAG TTTAAATAGA 
    GTAAAAAAAG AAAAAGGTGG AATCGAGAAT TTAAAGAAAT GTACGGTTTT 
    AAAAAACGAA TAAAAAAGAA GATGACTCTT CCTTTGTACG CATGTATGCA 
    ATTATCCTAG CTGCTGGTAA ATTAGAGGAC AATGATACAA ATACATTATG 
    AGTTTCAATA GTGACTACTC GTACGTATTT TTATACCTAT CAATCATGTA 
    CTATTGTATT CTAATACTTG CCTCGATTTT CATGTCCAAA ATTGTGCCAT 
    GCATCTAAAT CAATATCTTA TATTGTTTGT ACTAGACCAT TGTTTTTGTC 
    AACGTACTAA AGTTATTGAT AGTGTACATG TTTTACTCAT TTAGTCATTT 
    GAACATTCAA CTACAAAAGT TAAAAGAAAA CAAGTACATA AACTTTATTT 
    GACCATAGTT AAGTGTTGTG GAACTCTGTT TAATACAGTA ATTGTTCTGT 
    TGTATAAAGC AAATTAGATA CTCGATTATT CGTGTGTGTG TGTGTGTGTG 
    TTATAAAAGA GTAATGCTAG ATTGTTATAG CAATATAGAA AATGGAGTTA 
    TAAGTAACAT TGAAAAACAC GAAAAAAGAA ACAAAGATTC GTCTCCCCAA 
    AACGAAGAGC TGATGATACT TTCCCTCTAC AGCAATCAAG T

AT3G22968.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 59
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF59 represents a conserved upstream opening reading frame relative to major ORF AT3G22970.1
Computational Description
conserved peptide upstream open reading frame 59 (CPuORF59); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22970.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 397 Blast hits to 394 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 395; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22970.2

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT4G14620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G22990.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Curator Summary
Armadillo-repeat containing protein. Involved in leaf and flower development. Located in nucleus. Broadly expressed throughout vegetative and floral tissues.
Computational Description
LEAF AND FLOWER RELATED (LFR); FUNCTIONS IN: binding; INVOLVED IN: flower development, leaf development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 69 Blast hits to 69 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 2; Plants - 25; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23000.1

Model type
Protein coding
Short Description
CBL-interacting protein kinase 7
Curator Summary
Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2.
Computational Description
CBL-interacting protein kinase 7 (CIPK7); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: response to fructose stimulus, response to sucrose stimulus, response to glucose stimulus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 4 (TAIR:AT4G14580.1); Has 129268 Blast hits to 127250 proteins in 4353 species: Archae - 172; Bacteria - 15520; Metazoa - 47044; Fungi - 13122; Plants - 31560; Viruses - 528; Other Eukaryotes - 21322 (source: NCBI BLink).
Link
InterPro Scan - TAIR