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GT14616

CSHL Arabidopsis genetrap mutant lines

Original: GT14616

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14616

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10003 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT14616 - 3-prime edge 
    TTACCGACCG TTACCTACCG TTTTCATCCC TATGAGTAAG TAACCTTCTC 
    TGCTAAAATG GATTTGGCTT TAGCAATCGA AGACTCTTTA AGAACTACAG 
    ACTTCCCTAG CCCAGTCCTG AACATTGGGA TTTCCCCAGG CATCGCTTCT 
    TCCCGTGCTA TAAGCTTCGA GCATCCTTGA AGCATCAAAT AATAATTCAA 
    TCTCCTTTGA GTCACATGAC AAACACGATT CGACAAAAAA AGGAAGAAAC 
    GAAGAATCAC CTTGGAGCAA GAGATCGGCC ATAGAAGGTA GAGGAGCTGT 
    CGATTCGAGC GCCTTGGTTG GCGTAGAATC CGAGACGGAC TGAAGAATCC 
    GGCCAGCGAC TTCCCACCGG AAACCATCGC CGCTGGAATC GGGAAATAAT 
    TGCCACGTCG ACATTTATTC AGTTCTAGGG TTTCGAATTT TTCCGACTCG 
    GCGTTCTCTG ATTCAGCCGG AGAACTAAAC CTCGCGATTC AGAATTGCCT 
    ACCACACCAA GAGTCGGGAG TGCGGAAATT TTATTTTTAT ATTTTCTGGT 
    TTCTTTCCCC CCAAAACCAT CACCAAAAAT CTAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9934 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron2 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT14616 - 5-prime edge 
    CTTTCTCCCT GCCTGCTTAC TCAGGTACTT TATGTGACAG TATTGAATTC 
    CCTTGACTAG TCATTTGTTT CTGAATTCCC TTGAATTGTT ACTTAATGTT 
    GGTGAAAATG GTTTCCTGAA AATCTTTTGA ATGTTCCATG TTCTTGGCTA 
    CACTTTAGAT TTGCGGAACA CAAATTGCTC AATTCCCCAA ATGAGACAAG 
    TGGATACAGC TGAAACTTTG CCAATGTTCA GGACGGCCTC GGGGAAATCT 
    GTCCCTTTGA AAGAGTCTTC AATTGCCAAA GCTATGTCTA TTCTAGGAAG 
    TGATAAGATT ATTGACTCAG GTGTGTTCAT CTCACTCGA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR