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GT14638

CSHL Arabidopsis genetrap mutant lines

Original: GT14638

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14638

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1281718 [Map]; Strand: c
      • AT2G04030.1 - [+] show detail - Chaperone protein htpG family protein
        Distance: -123; Region: promoter
      • AT2G04030.2 - [+] show detail - Chaperone protein htpG family protein
        Distance: -182; Region: promoter
    Flanking Genome Sequence: GT14638 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATGTGTCAG 
    CTACAATTTC TCAAGGAGAG GCGCGTGTAA ATCAAACGGA TAATCCTACG 
    GTTTTGATGA AATGGCTTCT CGTAGACCTC ACAATCTCTA AACATCTCTT 
    CTCTTTATAC GCTCTTCTTC TAGAAAGCTC ACTTACCTCA CTCTCCTTAA 
    ACCTTTAATA GGGTTTTTAG GTTACTCTTT GTTCAACTAC TACAAACTCT 
    TTTCTCTTTA GAGATTGAGA GATTGTAAAA AAATCTCAAA TCTTTTCCTT 
    CACAACTTTC AAATCTAATG GCTCCTGCTT TGAGTAGAAG TCTCTACACA 
    TCTCCTTTGA CTTCAGTTCC AATCACTCCT GTCTCTTCTC GACTCTCTCA 
    TCTGAGAAGC TCGTTTCTCC CACACGGCGG CGCTTTAAGA ACCGGCGTTT 
    CGTGTAGCTG GAATCTCGAA AAGAGATGTA ACCGATTCGC CGTGAAGTGT 
    GACGCCGCCG TGGCGGAGAA AGAGACCACT GAAGAAGGGT CAGGTGAGAA 
    GTTTGAGTAC CAAGCTGAGG TGGGTTCTCT TTCATGTCTC CTAAAGTTTC 
    AATCTTGTTT TCTGGGTATC TCTCAACTTG ATGGGGATAT AAAGTTTTAA 
    GATTTGATTG TTG

AT2G04030.1

Model type
Protein coding
Short Description
Chaperone protein htpG family protein
Curator Summary
Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.
Computational Description
CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8928 Blast hits to 8878 proteins in 2458 species: Archae - 4; Bacteria - 3413; Metazoa - 2083; Fungi - 313; Plants - 465; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04030.2

Model type
Protein coding
Short Description
Chaperone protein htpG family protein
Curator Summary
Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR.
Computational Description
CR88; FUNCTIONS IN: ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: HEAT SHOCK PROTEIN 89.1 (TAIR:AT3G07770.1); Has 8908 Blast hits to 8859 proteins in 2447 species: Archae - 4; Bacteria - 3393; Metazoa - 2086; Fungi - 314; Plants - 461; Viruses - 0; Other Eukaryotes - 2650 (source: NCBI BLink).
Link
InterPro Scan - TAIR