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GT14657

CSHL Arabidopsis genetrap mutant lines

Original: GT14657

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14657

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23207210 [Map]; Strand: w
      • AT1G62670.1 - [+] show detail - rna processing factor 2
        Distance: -545; Region: promoter
      • AT1G62680.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT14657 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGATGT 
    TGTAATAAAG TCAAAAGCTT TCTCACTTGT AAGAGAAATC TATTTCCCTT 
    TGTAAATCTT ATCTTGTGTT CTTCCTAATA ACTGACAACT AATTTGTAAG 
    CAATGAAGTT GTAAAATTTT CGTAAGAAAA AACAAACTGT TGTGTAAGTT 
    TTAATCAGAA TATTCTAATT TCGGGAACAA AGCAATCATT GAAAAGGCTA 
    AAGGTGTTCT ATATTGTTAG ACGGTGTTGA ATGGGAGGAC GAAGCTACCG 
    AAGCACGTTT TCTGACCTTG ATGCATCTAG TTGTTGTAGA CTAGTTTCTC 
    CTCTTCTATT CTCGCTTGGT GGAATTACAA ATTTACAATC ATTCTCTCTC 
    AAGCTTCTTG ATTCGGTTTA AAAACGCAAA CCGATAATGC CCAGACTACA 
    ACATAATTAC TAAACCGGTT TCAACATTCA CTCTCTCTCT CTCTGCCTTA 
    TTACTTTCAC AGTCTCTCAC AGTGTTGGTT CGTTTAGGGT TTGGTTGAAT 
    TTTACAGAGC TTCCGAATCA GAGAGCTTGA GAAGAAATCA AATCGAGAAA 
    ATGAGGATAT CGTTGGCGAT TGCATCAACT GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23292332 [Map]; Strand: w
      • AT1G62880.1 - [+] show detail - Cornichon family protein
        Distance: 0; Region: intron1 (CDS)
      • AT1G62880.2 - [+] show detail - Cornichon family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14657 - 5-prime edge 
    ACTCTTCTTG CTTGTTGTAT TTGAATAAAC TCTGCTTAGG CTTATTCGAT 
    CACTGTATTG AACTAAATTT AGTGTTTTGT GTTCTTTCAA TCATAAATCG 
    TTTATAAGAA ATGTTTCTAA GTTTTGGGAA TGTGATAAAG TTAGTAACTT 
    TAGGGTTTCT TTATATAATA ACTAGTTAAT CTGTCAACTA GAAACAATTT 
    TGTTTCTTAA ATTCTTCAAT TGCTTCTTGA TATATGTGTA TTGAATCTCT 
    AGATGTTATC TTCTCAGTTT ATATCAATCC AGCAAGTATC TGTGAGTGTG 
    TACAAGTGTG TGTGCTCACG GGTATTAGAG TTTACTTCTT AATGTTTCTG 
    GATTAGTAAG CTCTGATTTG GTATCTGTAG AGTTGATCTA TAATGTTTTG 
    AGTAATGAGA TTCATAATAA CCAGATATTT TATAGGAGAG TCTTGATCAT 
    ATGTCTCTGC TATTTTGCTT TGCTTGTGTC CTTGTACCGA AACTGACGGT 
    GCTTATTGAT ATGATATTTT GTTGCAGCTT ATTAGTTTGG CTGATCTCGA 
    GTTTGATTAT ATCAACCCTT ACGACTCTGC ATCAAGAATA AACTTTGTGG 
    TATTACCAGA ATCCATTCTT CAAGGATTTT TATGCGTATT TTACCTCGT

AT1G62670.1

Model type
Protein coding
Short Description
rna processing factor 2
Curator Summary
Encodes a pentatricopeptide repeat protein required for 5' end processing of nad9 and cox3 mRNAs in mitochondria.
Computational Description
rna processing factor 2 (RPF2); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 71790 Blast hits to 15506 proteins in 316 species: Archae - 6; Bacteria - 84; Metazoa - 1433; Fungi - 1460; Plants - 65974; Viruses - 0; Other Eukaryotes - 2833 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62680.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 64113 Blast hits to 15255 proteins in 308 species: Archae - 5; Bacteria - 67; Metazoa - 910; Fungi - 1189; Plants - 59601; Viruses - 0; Other Eukaryotes - 2341 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62880.1

Model type
Protein coding
Short Description
Cornichon family protein
Computational Description
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: Cornichon family protein (TAIR:AT1G12390.1); Has 615 Blast hits to 615 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 159; Plants - 94; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62880.2

Model type
Protein coding
Short Description
Cornichon family protein
Computational Description
Cornichon family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR