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GT14658

CSHL Arabidopsis genetrap mutant lines

Original: GT14658

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14658

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3109807 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT14658 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACATGGA 
    CATTACAGAC AAAATGGGGG AAACCATAAA CGACTCTAAA CGATTACAGA 
    ATAACGACAA TCAGAAGCAA AAACATATAG TAACGAAACA TATGTATTGA 
    GTGAGATCAT GAAGATAACC TTTAGAGAGG CTCTGCGATG GGTAGAGAGT 
    TTTAGCGGCG ATAAGAGTTT TAAGAGCAGA GATCCTAGAA CCCTAATTCG 
    AGAGACGCAC CAATAATTAA CTGGTTTCGT GAGAGAGGAC TTATAAAAAT 
    AAAATAATGT CGACCAAAAG TCAAAAAAAA CTTGACCCGG TTTTAATAAG 
    TGATCAGTTC AGTTAATCTC AGACCGAACC GGTTCTTTAG TGTTTCGAAA 
    GAAGGTGGAG CCATCTCCAT TCCTCTACCA CGTGTAACCG TTATAGATTT 
    GTAACAATTA AGACCTTTAG ATTTTGTAAC GATCAAAGTT GCTAAAAAAA 
    AAAAAAGGTC TCTGGGGGAC CTAAAGGCTT TTTGCTAAAA GTTGGGCTGA 
    ACATCTTTTT TTTTGAACTT TTAAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3109735 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT14658 - 5-prime edge 
    TGTCCATGCT CTGTTTCTTT ACGTGTCCTC TCCGGCTTGT TAGATATCAG 
    TTTAGTTCCT GATTTACTGA GAAACCAAGC TTTTGAGCTT AAGTATGTTA 
    GGGTTCTGAC GTTGATTGAA AAATATTATA AACTGGTTTT CGAGTTTATT 
    TCTTTCTGGA ATTTCTTTTG TAGGCTGATT ATAAGGTGAC ACTGCTAGAT 
    ATACTGGAGA GGTTACAGTC TCTTACTACT TATCCTTGTC TCTGTTCGTT 
    GGAATCGATC TGTAGGATTC TCTCTTTCTT GG

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR