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GT14688

CSHL Arabidopsis genetrap mutant lines

Original: GT14688

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14688

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5746296 [Map]; Strand: c
      • AT5G17430.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -728; Region: promoter
    Flanking Genome Sequence: GT14688 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATCA GACGTGATCA 
    ATGCGATGAA CTATCTCATA TAGTAACTTC ACTAAACCTA CTATACATAG 
    AAATATTTTA TTGTTGTTAT TATGAATGTA CTCTAAATCT TAGGCAAAAT 
    GTATAACCAC GTTAAAAATA ATTTGACATG CAAAGATATT GTAAAAGTAT 
    AGATTTTCCT ATTTGAATTT TGAAGTCTTA GTGTCTTAGT GGCTACAGTT 
    CAACCAGAAA AAAACGCCTC AAATTTTCAA ACAAACATTG GAAACGAAAG 
    TAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5746229 [Map]; Strand: c
      • AT5G17430.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -661; Region: promoter
    Flanking Genome Sequence: GT14688 - 5-prime edge 
    CACTTTCTCC CTGCGTCTGA TGCGAATCAC ATATCCTATA TCTAGTTGAG 
    CATATGTTTC GTGGAAGACA GGAACCATCT CTTAGACCCG CACTTCAAAA 
    TATCACAAAA CACGAAACCA TGAATCTTTT GAGTTTGTTA AAAAATACTA 
    AAAGTGACGA GTTCGCGTTT GGAAAAAATG CCAAACTAAA TCGCTGGCTC 
    GTGTCATACG TTCACACATA CACATGTCTC TAAGAGACAC AGCATCATTG 
    GTCTTAAATC GACAACGAGT GAGTTTTTGG ATTTTACTAT TGGTCCTCGA 
    CATGTTTACC CATTTTTGTC ATTTACATTT AACATTTTAT ACGCATGAAG 
    AGAGAGAGAC AGAAAGCAGA GATTTGAAAT GGTTTTTGAC TGATTAATTA 
    AAGTGTCATC AAAACAAATT GGGATTACGA GATTATCCAG TTGAAACGAC 
    ATTACTACCC CTACCCTTCA AACCGACCAA TACATCTCCA CATTTTTCAA 
    GTAAATATTT TTCTTTCTGA ATTTAATTGC AAAATTCTCT AAATGCGCAT 
    AATATGTCGC CTCGGAAGAA ATGAACATTA TATTTTTGAC TTTTCTTCTT 
    CTTCTTCCTC TTCTCTCTTC ATTTAACACC AAAACCTTTT TCTTTCTCCT 
    CTTCATGCAT GAACCCTAAC TAAGTTCTTT TTC

AT5G17430.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.
Computational Description
BABY BOOM (BBM); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR