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GT14688

CSHL Arabidopsis genetrap mutant lines

Original: GT14688

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14688

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5746296 [Map]; Strand: c
      • AT5G17430.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -728; Region: promoter
    Flanking Genome Sequence: GT14688 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATCA GACGTGATCA 
    ATGCGATGAA CTATCTCATA TAGTAACTTC ACTAAACCTA CTATACATAG
    AAATATTTTA TTGTTGTTAT TATGAATGTA CTCTAAATCT TAGGCAAAAT
    GTATAACCAC GTTAAAAATA ATTTGACATG CAAAGATATT GTAAAAGTAT
    AGATTTTCCT ATTTGAATTT TGAAGTCTTA GTGTCTTAGT GGCTACAGTT
    CAACCAGAAA AAAACGCCTC AAATTTTCAA ACAAACATTG GAAACGAAAG
    TAAAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5746229 [Map]; Strand: c
      • AT5G17430.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -661; Region: promoter
    Flanking Genome Sequence: GT14688 - 5-prime edge
    CACTTTCTCC CTGCGTCTGA TGCGAATCAC ATATCCTATA TCTAGTTGAG 
    CATATGTTTC GTGGAAGACA GGAACCATCT CTTAGACCCG CACTTCAAAA
    TATCACAAAA CACGAAACCA TGAATCTTTT GAGTTTGTTA AAAAATACTA
    AAAGTGACGA GTTCGCGTTT GGAAAAAATG CCAAACTAAA TCGCTGGCTC
    GTGTCATACG TTCACACATA CACATGTCTC TAAGAGACAC AGCATCATTG
    GTCTTAAATC GACAACGAGT GAGTTTTTGG ATTTTACTAT TGGTCCTCGA
    CATGTTTACC CATTTTTGTC ATTTACATTT AACATTTTAT ACGCATGAAG
    AGAGAGAGAC AGAAAGCAGA GATTTGAAAT GGTTTTTGAC TGATTAATTA
    AAGTGTCATC AAAACAAATT GGGATTACGA GATTATCCAG TTGAAACGAC
    ATTACTACCC CTACCCTTCA AACCGACCAA TACATCTCCA CATTTTTCAA
    GTAAATATTT TTCTTTCTGA ATTTAATTGC AAAATTCTCT AAATGCGCAT
    AATATGTCGC CTCGGAAGAA ATGAACATTA TATTTTTGAC TTTTCTTCTT
    CTTCTTCCTC TTCTCTCTTC ATTTAACACC AAAACCTTTT TCTTTCTCCT
    CTTCATGCAT GAACCCTAAC TAAGTTCTTT TTC

AT5G17430.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.
Computational Description
BABY BOOM (BBM); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR