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GT14707

CSHL Arabidopsis genetrap mutant lines

Original: GT14707

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14707

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16121815 [Map]; Strand: c
      • AT2G38500.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -2707; Region: intergenic
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -2170; Region: intergenic
    Flanking Genome Sequence: GT14707 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATCT 
    AAAAGTGGAA TGTATAAAGG CAACACTTTA GTAAATTGGT TCAGTCTAAG 
    AGACTGACTA TGTGGAATTT TTTATTAATA CAAAAACTCA ACTGGCTACA 
    TATATAAACG AAGAAACAGA TGTTCCCAAT AAAAAAAACT TAAAAAAAAA 
    AAAAAAAAAA TGTTTCAAAA AAAAAGGGAA AAACCGAGAA ATTTGGAATT 
    TATTTAGGGG GGCCAACAAG GGAGCGGTCC AAAAATCCGG GGGGAATTAA 
    AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16121767 [Map]; Strand: c
      • AT2G38500.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -2659; Region: intergenic
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -2218; Region: intergenic
    Flanking Genome Sequence: GT14707 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCTTTTAGAA AGCCTTGTTG ACACTTATAG 
    TAAAAAAACA AATATAATAC TATGAGTTTA CACTTATAGT AAAAGTAATA 
    ATATAATTGC CAACTCTTGC CTTTCATTAT ATTCTTCTCT TTGAGATTAA 
    CGGTTGAATA TTTGTTTCAT GTATATAACT TTTTTACAGA TGCTGATTAT 
    AATTTTCTTC TTT

AT2G38500.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38510.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link
InterPro Scan - TAIR