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GT14712

CSHL Arabidopsis genetrap mutant lines

Original: GT14712

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14712

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 41156 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -967; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14712 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTTTGCAGC TATCTCTAGC TCCGACCCTG TCCCCATTAG GATTACGTCT 
    AGTTTTGTCA CCTGTGGAGT TGTCTGAGAT TACATATCCC CCCTTATTCT 
    CACTCGAGGA AGAGGGTCCA GGAAGATGAG GGAGCTTTTG TCGGGACAAA 
    GCCAGGATCG AAGGCCTCTT TCGGTTCTCT AGAGCAACTT GGGAGGCGGG 
    CGCAGACAAA GATATGGGAA GGAGACTCAT ATGACTATGG GCCCAAAAGC 
    CCATAGGGGA AATGTCCGAT TAATCACGAG TTATATGATA GCTTTATATG 
    ACACCGTTGG AGGAAAAAGG AAATGGAAGT AAAAAATCAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 41100 [Map]; Strand: c
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -911; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14712 - 5-prime edge 
    TTTCTCCCTG CTGCAAGGCT GGAGAGAAGC TAAGAGAAGA AAGAAAAGCA 
    GTGAGAGTAG TGTCATTGGT GAGTTGGGAG CTGTTTGATG AACAAAGAGA 
    AGAATACAAA GAAAGTGTGT TACCTTGAGA GGTTTCAGCA AGAGTGAGCA 
    TTGAAGCAGG GTCGACCTTT GGGTGGGAGA AGATGGTTGG CTCCAAAAGA 
    AAAGCCATCG GCGTAGACAG TTTTGGAGCA AGTGCACCAG CCAATGTGCT 
    CTACAGGAAA TTTGGACTCA CCGTGGATAC GGTTATTGCA GCCGCTAAAG 
    ACTTTTGTTA AGCTAAGCTC TCTTTTACAC ATCATAAAGA CATTTTCTAC 
    GTTGTTCAAG TGTGCCTTTC CACATACATT ACCCGGACTC ACTCACTAGT 
    CACTATAAAT CAATATCGTT ATGTTTTTAT CTTACAATAA GTGAATTTGA 
    AGAATAAAAT AGAGCTTTGA TGGATATTAC TATTATATAT GCGGTCTAGT 
    AGATGCGTGT TGTTATTATA TTATTCCTTG AAGATTACTC TTTGCTTTTT 
    TGTACCCCAT GGATAAATGT GCCTTGGTAT TAAGTTGCAA ATTTGATTTA 
    ATTAATCCCT AAACATGTTA CTAGTTAGAG TTTGCACGTG ACGATCTTGG 
    GCAGC

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR