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GT14751

CSHL Arabidopsis genetrap mutant lines

Original: GT14751

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14751

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8715354 [Map]; Strand: c
      • AT5G25190.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -7606; Region: intergenic
      • AT5G25200.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1412; Region: intergenic
    Flanking Genome Sequence: GT14751 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACCTGCCTT 
    AAACATAATC ATTGAAATAT TTATGTTAGT ACAAATAGAA TAATATACAT 
    AAACCACGGT GTTCAAAAAA CAAGAAAACA CCAACACACA CAAACCACAC 
    CACGTTTCTC TAAAGGAAAG TTTGAAATTA AATGGATCCA AACAGAACAG 
    AAGAATGTAT CTTGACTCCT AAAAGAGATT TGTTGTGGAG GGGGATGTAT 
    TATCGGGGAA TGTATCTTTA CTCCTAAACA GAAAATACCA CAGATATATT 
    GTGAAGAATA TTTCTCACAC AAGTTACGGT ACTTAGTTTG CACAGTCCCT 
    AATCATGTGG GATCTGATAT TTGATAAATA TAATAAAAAT TAAATCCAAA 
    AAGGAAATGA CCAATTATGA ATATAGAATG ATCTCCCAAG GGATCTAGTA 
    GAGGAGATTA TGTTTAAGAT TCCATTGAAA TTCATAAAAA CAGTGAGATT 
    AACTTGCAAA AGTTGAAACG ACTTATCCAA AAGTGAGAGC TTTTCGAAGA 
    TGCACATTTG GTAAATCAAC AAGAAAAGGG AAGTCTATGA TTAGCGTGAT 
    GATGCCTCAT AATCTTTATC TAATGAGTGG TGTCGTCGAC GACGTTGATC 
    CATCTATAGA GCATAAAGGT CAACTTAGTT TCCTTAACAA TGAAGTCGAT 
    ATATCTCATA TTTTCCACTA TGAGGATTTA ATTTTATGCA TCTTGGAAGA 
    CGTTATTACG ACTATTTTTT GGAATCCCTA TTTGGCGTCT AGTTTTACAG 
    ATGATAGATA TGTATAAGCG TTTTTATCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12589748 [Map]; Strand: w
      • AT4G24280.1 - [+] show detail - chloroplast heat shock protein 70-1
        Distance: -240; Region: promoter
    Flanking Genome Sequence: GT14751 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GAAGGCAGGA CATAATACCA GAATCCAACC 
    TGAGACAAAC ATTTTAAAAC ACTGGAACGG GTCCTAAATT TTTCACAACC 
    CAAAAAATTT GAACACCGTG GCTGTTTTTA TCTACTCCGT ACTTGCTATT 
    GTTACCCTTA TCATAGGCTG GAGGTGCACA AAAATAACTA AACCATGCCT 
    CTATGTAGTT TTCTGTCTTT CTTATTTTTA GTTTTTTTCA TCCTCACTCG 
    ACCAGGGGNN CNCAATTTCT CTCCCTCTTT CTCCCACCTT CCTCTTATCT 
    TCTCTGCCTT CTATATCTCT TCCTCCTACT TTCCCTTAGG GTTTTTCAGC 
    TTCAAACCCT CCTTGCACTC TCCGCTTCCC TCCGTTACCT TTACTTCTCT 
    ATTGCTTAGC TCGAAAAATG GCATCTTCAG CCGCCCAAAT CCACGTTCTC 
    GGGCGGAATT GGATTCGCTT CTTCTTCTTC TTCCAAGAGA AATCTCAATG 
    GTAAAG

AT4G24280.1

Model type
Protein coding
Short Description
chloroplast heat shock protein 70-1
Curator Summary
Involved in protein import into chloroplasts during early developmental stages.
Computational Description
chloroplast heat shock protein 70-1 (cpHsc70-1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-2 (TAIR:AT5G49910.1); Has 36155 Blast hits to 36031 proteins in 4857 species: Archae - 160; Bacteria - 17964; Metazoa - 3544; Fungi - 1694; Plants - 1235; Viruses - 354; Other Eukaryotes - 11204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25190.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational Description
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G15360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25200.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18636.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR