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GT14755

CSHL Arabidopsis genetrap mutant lines

Original: GT14755

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed); embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14755

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 96490 [Map]; Strand: c
      • AT2G01140.1 - [+] show detail - Aldolase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14755 - 3-prime edge 
    TGAAACGGTA GAGGATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    CCATAGGTAG TACAAGGAAG GTACAAAAGT GATGGTGATC AATCTCTCGG 
    GGACTCCGCG GGACAGAGAC AGAGAGAGAT CTGGGATTTG GAGGAGAGTG 
    TTAAAGCCAA AGGTTTTGTT TACTACAAGT AGTCGTCTAC TTTGGCATCA 
    CCTACTCCCA CCACCAAAGA GCCTCCTTCT CTTTACCATT TTATTCCCCA 
    ATTTACCGTA AATGACGCTT TTAACCTTGA GGGAGATACT GGTAATTTTT 
    TCTAGTAGTT CATCAGTCTC TCAACAACAA GAATCTGAGA ATAACCAAAA 
    CTCTACCGTT TCGTCTACCC AAACTATCCT TCTCCTACCA TTGCCTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12589680 [Map]; Strand: w
      • AT4G24280.1 - [+] show detail - chloroplast heat shock protein 70-1
        Distance: -308; Region: promoter
    Flanking Genome Sequence: GT14755 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGCTAGA ACCTTTATAC 
    GACCGTTTTT GTTCATATAG ACATAGTTTA CACTACCGAT CCAGTTTGAT 
    GTCTGAGACA ATAGCAATAG ACTTTTTTTT AACTCTTGGA ATACTTGTTG 
    GTAAATGCGG TGGCGACATT TTTGTCATAA ACTTGTCTTT TGATTATGGG 
    TATTATCCCT TATTACTGTA TATACCTCAA AGTTCATGGA CCAAAGAGTT 
    ACCAAATAAA TTCGAATAAA AATAAATAAA TTCGAACTCC ATGTGCAAGT 
    GCATTGGGCT GGACGACTCT CTCTCGAGTT TTACACAAAA GGACAATCTT 
    GGAGTCAAGG ATCCTCATCA TCTTCCAAAT AAAGTAATAT TTAGTTTATT 
    CATCTTATTG CTTGTATGAT AATTTGTTAA ATTCTATCTT TACACAGTTT 
    TCTTTCTTTG TTATCTTTCG ACGGATTCAG ACGCACAAAC CACAATGGGT 
    CTACTACTAC TATAGTTATA GAAGTAAGTG GGTTGTGACT TTCAGTAAAA 
    GATACATAAA AGAAAATCTA AATCGTGTAA TATATCACAT CTCACTAGTC 
    ATCAAGAATG CAAAATACGT TAAACCACTG ATCCAATACA CAAAGCGATC 
    GATAAAACTA TAAAGAAAAA TTTCTTGTAT TAAACGTTTC ATGAAAAAGA 
    TGGACTCTAA TCGAAAATAA CAATGAGATC TATTATATGA TAGATATGGA 
    GGTAGAGGAA ACAAAAACTG GTTTCACGAG ATCCCAAAAA AACGCTTACA 
    AGCCTTTACG AATGCTTTTT TCTTGA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14755 - 5-prime edge 
    ACGCTCCTTT GCTCACACCT CTGCTTCT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT14755 - 5-prime edge 
    CTCGGTACTA TGGCGTCTGG CTAGCTCGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12589760 [Map]; Strand: w
      • AT4G24280.1 - [+] show detail - chloroplast heat shock protein 70-1
        Distance: -228; Region: promoter
    Flanking Genome Sequence: GT14755 - 5-prime edge 
    TTTATCCCTG CAAAAACCCA TCAAATACCA TCATCATTTC TCTTTCTTGG 
    TTGGTTCACC CAAAACGTAC CTCAAAATCT CAAGCTAAGT GATCCGTGGC 
    ATTTGAGAGG TTTAAGAGAT GGTGGGCTTT AGTGAAAAGT GTAGATGTTT 
    CTCACCACAA GTCTCTAGTA ATGGGTGTCA AACTCACAAA CACTTGTTGG 
    CCTATTGAAG CCCATCCATC TTCTCTTCTC GAAACTTCAA GTGGGGTCCA 
    CAATTTCTCT CCCTCTTTCT CCCACCTTCC TCTTATCTTC TCTGCCTTCT 
    ATATCTCTTC CTCCTACTTT CCCTTAGGGT TTTTCAGCTT CAAACCCTCC 
    TTGCACTCTC CGCTTCCCTC CGTTACCTTT ACTTCTCTAT TGCTTAGCTC 
    GAAAAATGGC ATCTTCAGCC GCCCAAATCC ACGTTCTCGG CGGAATTGGA 
    TTCGCTTCTT CTTCTTCTTC CAAGAGAAAT CTCAATGGTA AAGGCGGTAC 
    CTTTATGCCG AGAAGTGCCT TCTTCGGTAC AAGAACCGGT CCTTTCTCCA 
    CACCCACTTC TGCTTTCCTT AGAATGGGCA CCAGAAATGG CGGCGGCGCT 
    TCTAGATACG CGGTTGGTCC GGTGCGTGTG GTTAACGAGA AGGTTGTTGG 
    AATTGATTTG GGTACGACTA ACTCCGCAGT AGCTGCTATG GAAGGAGGTA 
    AGCCTACGAT TGTGACTAAC GCTGAAGG

AT2G01140.1

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, pentose-phosphate shunt; LOCATED IN: mitochondrion, chloroplast, plastoglobule; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4797 Blast hits to 4792 proteins in 909 species: Archae - 0; Bacteria - 723; Metazoa - 1159; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2431 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G24280.1

Model type
Protein coding
Short Description
chloroplast heat shock protein 70-1
Curator Summary
Involved in protein import into chloroplasts during early developmental stages.
Computational Description
chloroplast heat shock protein 70-1 (cpHsc70-1); FUNCTIONS IN: protein binding, ATP binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to cold; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-2 (TAIR:AT5G49910.1); Has 36155 Blast hits to 36031 proteins in 4857 species: Archae - 160; Bacteria - 17964; Metazoa - 3544; Fungi - 1694; Plants - 1235; Viruses - 354; Other Eukaryotes - 11204 (source: NCBI BLink).
Link
InterPro Scan - TAIR