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GT14772

CSHL Arabidopsis genetrap mutant lines

Original: GT14772

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14772

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4753976 [Map]; Strand: w
      • AT3G14270.1 - [+] show detail - phosphatidylinositol-4-phosphate 5-kinase family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT14772 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATCTGA ATTGAGCTGA 
    AACCTTTGAG TCACCCAGAA GATCGTCGTC GTCGTTCTTC AATACTCGAA 
    TTTTGAGGGA TTTTTTTCCC CCTTTGATTT TCAGGTTTTT TGAAAAAAAT 
    TAAAAAAACA AAAATTTGGA GGTATTGACT GATATGATAT TCATGTTTTT 
    CTGTGGCAGA GAAAGCGACA TCGTCACGTC AATTATCTGT GTCTCACGGA 
    TCTTAACATA CACCTTCATG TACCTAATCC TAACCCCTTG CGTAACTTAT 
    GTCTTTTTGG CCCGTGGAAT GAATTATATG GACCCAACAA TACTATAGAG 
    ATTCCATAAT TGTGAATTTA TAAACGCGTT TTCTAAAAAT ACATACAAAT 
    CAAATCATAA ACTTTTGTTC TTAGAAAGAA AATCGAGTAA AATTTGGAAA 
    AATTAAATAT GAAAGATATA TTTCATTTTA CAAAAATTCT TGAAAAAAAT 
    ATAGATATGT TAAACTTTAT TAAACTGATC CCATCAATAT ATGTGCAGTC 
    TAGTTACATT TATTGAGATG TTATCATACT AATACTATTA TTAATTCTAA 
    CACCCAAAAC ATGGAATCGC TAATATCAAA TTTTGTAATG GAAAAACAAA 
    AATACTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4754048 [Map]; Strand: w
      • AT3G14270.1 - [+] show detail - phosphatidylinositol-4-phosphate 5-kinase family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT14772 - 5-prime edge 
    CTTTCTCCCT GATTAGATGA TTTTTTGGGT TGAAGATATT TGAAACGATT 
    CGCCTTCTTT TGGAATTTGG AATTTTAAAG GATTTCGATT TTGATGTGAA 
    TTTTGCACAT GATCAGGGAC TGATAATTAT TGGGTTTTGC TTGATTTTGA 
    TTGTTCATGA ACAAAAATTC TGGAAAAGAT CTAGCTTGTT CATAAACAAT 
    TTTTTTAGAA AACAGAACAA AGTTTTCTCC GATCGCTCCT AGAATTGTAT 
    ATATACTTTT CTGATTCGTG TTAATCTGGT GATAATTGAA TTAGATCGTC 
    ATAAAACACG TCTTCTTGTT GACACTGATT TTAGCGTTTA ATTTTTATTT 
    TTTTTCAGTG AGAGGTTAAG CTCAAGGTCT CTGGATTGCT TTTGAATTTG 
    CATGCTGTTG GAGGATGATA GACCATCGGT ATGTGCTTGA GTTTTCTCGA 
    GGAAGGATGA ACCGATACGA GCCGTCTTAT TGATTAATTA TATATATGTA 
    GTGAAGTGCC TGAAGGAGAT ATATATATAT ATATATATAT A

AT3G14270.1

Model type
Protein coding
Short Description
phosphatidylinositol-4-phosphate 5-kinase family protein
Curator Summary
Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization.
Computational Description
FORMS APLOID AND BINUCLEATE CELLS 1B (FAB1B); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (TAIR:AT4G33240.2); Has 8765 Blast hits to 8134 proteins in 458 species: Archae - 587; Bacteria - 13; Metazoa - 3836; Fungi - 1744; Plants - 978; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink).
Link
InterPro Scan - TAIR