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GT14774

CSHL Arabidopsis genetrap mutant lines

Original: GT14774

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14774

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 55998 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2549; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1201; Region: intergenic
    Flanking Genome Sequence: GT14774 - 3-prime edge 
    CGACCGTTAC CGATCCTTTT CATCCCAGAT TTATATACAT ACGTGAGTGT 
    GAAGTATTTC TTCACAATTT ATTTTTGAAA ATAGCTTTTA ACCCATAGCA 
    AATGCCTATG TTGCCATGGG GTAGACGGGA CTGATCACAC ATCGAAGCAT 
    ACTCTTGATA ATATATGGAC AGGGAAATAC ATATTAGAAA GCTATCAAAC 
    TTTCTCTTCC TTTTTTTTTG TTTGCTGGGT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9122528 [Map]; Strand: c
      • AT2G21310.1 - [+] show detail - transposable element gene
        Distance: -94; Region: promoter
    Flanking Genome Sequence: GT14774 - 5-prime edge 
    TAGTATTTAT CAGTGACTGA TTACATCAAT TTTAATTCTA ATAGTATTTG 
    CTAGACCTCG CCTGGACCGG TCAATGTTTC TACTTACTGC GCTCATCAAA 
    CGGTTACCAT TTGAATCTAG ACATGTTGTT GATGTAAAAA ACTTGAATCT 
    TTAACTGTTT TATGCGGAAG CTCTCACTAA ATCTCTCTTT GTTCGATCAC 
    TCGTGTGTTT AGACAAAGAA AGTAAAACAG ACACAAGCAA ATGTTAACCC 
    AGTTCACGTT CAGTGATGAA CGCTACGTCT GGACCGAGAT TACCCGGAAA 
    TCCACTAGAA AGCCTTGGTT ACACAAACCC TTAGAAACAA GACTGAATAA 
    ACTTTCAGCT GCCTCTCTTG CACTTACTCT CTTAACCCTA ATGTCTCACT 
    TATCTTCTCC TTTATACAAC TCTACTCACC GCCACGCTCT TCTCTCTTCT 
    TCCGTACTCT GTTTCAAATG CAGAGACAAA GAGACAAAAT GGTTGAACCA 
    TTGGCAAGAG GTTAATTACG TCTCTAGCCT TGATGAGCTG TATGACAAAG 
    CACGTGCGCC TCTCGTGACT TCGTTTCTTT CACAAGCTGA GACCTTCTCT 
    TTGGATTAGA GTCTTTATGA CACTTTAGGC AATACTTCCA CAAAACTCCA 
    CCTTGCCTTA GTGTCAACCT TTCCTTTGCT TCCCTTCTAG TGTAACTTGA 
    TTTTCCATCT CGAACATGAT CT

AT2G21310.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.8e-151 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR