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GT14775

CSHL Arabidopsis genetrap mutant lines

Original: GT14775

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14775

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16121814 [Map]; Strand: c
      • AT2G38500.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -2706; Region: intergenic
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -2171; Region: intergenic
    Flanking Genome Sequence: GT14775 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATC 
    TAAAAGTGGA ATGTATAAAG GCAACACTTT AGTAAATTGG TTCAGTCTAA 
    GAGACTGACT ATGTGGAATT TTTTATTAAT ACAAAAACTC AACTGGCTAC 
    ATATATAAAC GAAGAAACAG ATGTTCCCAA TAAAAAAAAC TTAAAAAAAA 
    AAAAAAAAAA ATTTTTAAAA AAATAGGGGA AAAGACGGGA AATTTGAAAT 
    TTTTTTGGGG GGGACAATAA AGGAGGGGAC ATAAAAACCG GGGGAAATTA 
    AAAAATTTTT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 358996 [Map]; Strand: w
      • AT3G02065.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G02065.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G02065.3 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -34; Region: promoter
    Flanking Genome Sequence: GT14775 - 5-prime edge 
    TTTCTCCCTG CCACTTGCGA TTACCAATCC ACCTTTCGAT CGGAAAATCC 
    TTCTGTTTGC GAATCTATTG GGTATATATC TCTCCTTGAT GATTTGATTT 
    GATTCTATTG CATTGAGATT GATATCTTGT TGCAGGGGAA CTCTGGTTCC 
    ATGTGTTAGG TATTTTCTNT TCGCCCACCT AATTCATCTT GTGCATGTCG 
    ATTCTGAATA ATGAACGAAG AAGGCTGCGT CCCGCACAAC TCTGGTTAGT 
    CTGTGTACCT AATAGTAATT CGTAACCCTC CACAGAGCTT ACTCATCCGC 
    CGCTTTTGTA TTCTCTTTGT TGTAGATGTT GTTAAACAAA AGTCTATAGA 
    TCAAAGAGCC CCTCTTTCCG GGGAACCTAA ATGTGTTATC TGCAGTCGTT 
    ATGGTGAGTA CATATGTGAC GAGACCAATG ATGACGTCTG CAGCCTCGAG 
    TGTAAGCAAG CACTCCTGAG AAGAGTTGAC AGCGCTAGAG TTTTTCCTGC 
    CACAGATGAG TGCTTCTATG TTAGAGACCC AGGATCTTCT TCCCACGATG 
    CTCAACTACT TAGAAGAAAG CTTGATATTC TGNTCCCAAG GACAAGGATC 
    AGCAGTCCCT CCACCTGTCT TGACTTTCAC TTCATGTGGA CTTCCTCT

AT2G38500.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38510.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02065.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 40669 Blast hits to 40162 proteins in 3004 species: Archae - 589; Bacteria - 20482; Metazoa - 5880; Fungi - 4585; Plants - 2539; Viruses - 12; Other Eukaryotes - 6582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02065.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02065.3

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, HIT-type (InterPro:IPR007529), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR