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GT14789

CSHL Arabidopsis genetrap mutant lines

Original: GT14789

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14789

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11574526 [Map]; Strand: c
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: -794; Region: promoter
    Flanking Genome Sequence: GT14789 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACCTGA 
    TCAAATGAAG GACGATCGAA AGCCTAGATG TTTTATTGTT TCAAACTTTC 
    TAGATCGACT AAATGTCACA AGAGAATTTT TTTTTTTTTT TGGGGAGGGG 
    GCCCTCCCCC AATTTGAAAA AAAGGGGGGC CCCGGGAAAA AAAACGGGGC 
    CCCCAATTTT TTTTAAGGGG GGAAAAGGGG CATTTAGTTA AAAAATTTAA 
    AACCCCTTCC AAGGGGGGTT TTTACCAACC CAAAAAGGGT TTTCCCAATT 
    TCCCAAAAAC CCAAAAAAAG GGGGGGGGAA TTTTGAAATT TTTAAACCCC 
    CTTTTAACCC AATGGGAAAA AATTTTGGAA AAAAAAAAAA AACCCCCCCT 
    TTTCCAAAAA AAGGGGGGTT AAACCCAAAA TTTCCTTCCC CAAAAAAAAT 
    AAAAAATTTT GGGAAAAAAT TGGGCCCCGG GGGAAACCAA AAAATTAATA 
    AAGGGCCTCC CCAAAAGGAA AAGGGTGGGT CCCCAAAAAG GGGCAACCCC 
    CCCAAAAAAT GGGGGGGGAA TCCCAACCCG GGCCGGGCAA AAGGAACCCA 
    AAGGGAATTT TTGGGCGGGG CCCCGGGAAA CTTTTTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11574418 [Map]; Strand: c
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: -902; Region: promoter
    Flanking Genome Sequence: GT14789 - 5-prime edge 
    TGGTTTGAGG CACAAGGTTC AAAAATTGTA TTTTTGGGAG CCCTTTCACC 
    GGATGCCCTA ACTTAGTATC AAAGTGTTCA ATTTCAAAAA TTGTATGTTT 
    AACGAATTCT TCTCCGGTTT AAAATCATTT AGCTTGAAAG AAAATGAGAT 
    GTTTTCTTAT TGATGTCAGC CAATAATGGA GAGGCTTTTC TCCCTTGCAC 
    TGATCAAAGA TTGAAGCGTT AAGCTAGCTA GTCATAAATT TCATATATGA 
    TCATAAGATA CATACACTGC AAAGTTTTAC AAACGGACTG CACGAGATTG 
    ATGATGGTGA CAAACAATTG GGAAGCCTAA CCAACATTTT ACCCCCGTCA 
    TTTATAATGT CAAAAGAGAA GGTATTTAAG TGTTCCTAAG AAAATTACCT 
    TAATTTTATG TAATTTGAAA ATTTTAAACT CGTGTTTAGT AGATTACGTG 
    TATAGGCATT TGGGAAAAAT AAGTCTTTTA ACTGGTTTTA TTTCTTT

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR