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GT14818

CSHL Arabidopsis genetrap mutant lines

Original: GT14818

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14818

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2352583 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 3792; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -2136; Region: intergenic
    Flanking Genome Sequence: GT14818 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCGTGT CTAACGAGTT 
    ACTAAACTAA TAATTAATTT CTATCTCAGA GAACTTCAAA AGAAAAGACT 
    TCTCGTAGTT CATCATCATC TCGACGACAC TAAACTGGAC ATATTATATA 
    TTTATGCTTG GGATATTTTT AGTGTTTTTT ATAGCGAAAT ATCCTTGATG 
    TTATATATGT ATGTGTTTGA ATTCTCAAAC TTCTCCACTT CATCTCACTC 
    TACTAATTTG TCGGCGGAAT GTTGATATTC TTTTCTTTTT GCAAAAAAAC 
    GAAGTGAAGA CTTTCCTACA TGCTAATCCA AATGATTCAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2352540 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 3749; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -2179; Region: intergenic
    Flanking Genome Sequence: GT14818 - 3-prime edge 
    CCCTAATGTA AGGTGTGGTT TACCTTAACA TTAAAAAGAA ATGTCAAATT 
    GTCAAAATAT ATTAACATAA AACATATATG TGGACACTAA ACTGGACATA 
    TTATATATTT ATGCTTGGGA TATTTTTAGT GTTTTTTATA GCGAAATATC 
    CTTGATGTTA TATATGTATG TGTTTGAATT CTCAAACTTC TCCACTTCTC 
    CTCGCTCTAT TATTTTGTCG GCGGAATGTT GATATTCTTT TCTTTTTTGA 
    AAAAAACGTA ATGTTGATAT TCCAACATGC AGTTCAAAAT GATGGAAGAT 
    TCAATTTGAA ATAATGTTGA ATGTACGTCG AAATTCATGG GTACAAGCTA 
    TTTTTTGGTG TATAGTGATT TTTCAGTCCA TATATACATG AGAATCGAAA 
    ATATTTCTGA TAAAAATTTC TGAATATGAA ACAATAACCA TTCTTGGTTC 
    GTATCTTTCA GTTTTAGTTC ATACATTAAA GACTTTTTCG ATTAAAAAAA 
    ACATATATAT AGAGTACAGA AGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2352640 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 3849; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -2079; Region: intergenic
    Flanking Genome Sequence: GT14818 - 5-prime edge 
    CTTTCTCCCT GCCTTACATG CCAACAACTC ATAATTTCAT GAATTTTCTC 
    TGTGTAATTT CATCTGTAGA TTACCAAACT CACTGCATTG TGAAGAAAAT 
    AACAAAGATT CATCAATTTT CTCTTGAATT TAACCTTGTA CCAAAAAAAA 
    AAATTTTTTT TTCCAAAAAA TCCATTTGGT TTTTCCCAAC TTTTGGAAAA 
    GAACTTGTCC AAAAAAAAGG GGTTTTTTCC CCCCATCCAA ACTTTAGGGG 
    AAAAAAAACC GAACCCAAGT TTTTTTTTTT GAAAAACCAA ATTTTTTTCC 
    CAGCCAAAAA AAAAAACCCC CGTTCCAAAA AAACCGGGGG TTTTAAAAGG 
    GACCCCGGGG TTAAAGGGGG GCCCCCCCAA AACCGATTTT TTTTCCACCG 
    CCCCCCTTGG CCCTTGGGAA AATCCCCTCC GGTTTTCCAA AAAAAGGGGC 
    CCCCCTTTCC CAAAAAAAAA AAATTTTTTC CTCCCCCGGG TTTTTTCAAA 
    AGGCCCCCCA AAAAAAGGGG GGCCCCCAAC CCCCTCCAAT TTGGAAATTG 
    GGTTGACCCT TTTTCAACCC CCACCTTTTT GTTCCTTTTA TTTAAACCCC 
    CACCCCCCCC CCTTTGGGGA GGGGGGTAAA AAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2352640 [Map]; Strand: w
      • AT3G07350.1 - [+] show detail - Protein of unknown function (DUF506)
        Distance: 3849; Region: intergenic
      • AT3G07360.2 - [+] show detail - plant U-box 9
        Distance: -2079; Region: intergenic
    Flanking Genome Sequence: GT14818 - 5-prime edge 
    CTTTCTCCCT GCCTTACATG CCACAACTCA TAATTTCATG AATTTTCTCT 
    GTGTAATTTC ATCTGTAGAT TACCAAACTC ACTGCATTGT GAAGAAAATA 
    ACAAAGATTC ATCAATTTTC TCTTGAATTT AACCTTGTAC CAAAAAAAAA 
    AATTTTTTTT TCCAAAAAAT CCGTTTGGTT TTTCCAAAAT TTTGGAAAAG 
    AACTTGTCCA AAAAAAGGGG GTTTTTTCCC CCCATCCAAA CTTTAGGGGA 
    AAAAAAACCG AACCCAAATT TATTTTTTGG AAAACCCAAA TTTTCTTCCC 
    AGCCAAAAAA AAAAACCCCC GTTCCAAAAA AACCGGGGCT TTAAAAAGGG 
    ACCCCGGGGT TAAAGGGGGG CCCCCCCAAA ACCGGTTTTT TTTCCCCCGC 
    CCCCCTTGGC CCTTGGGAAA ATCCCCTCCG GGTTTGCCAA AAAAGGGGCC 
    CCCCTTCCCC AAAAAAAAAA AATTTTTTCA ACCCCCGGGC TTTTTCAAAA 
    GGCCCCCCAA AAA

AT3G07350.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF506)
Computational Description
Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07360.2

Model type
Protein coding
Short Description
plant U-box 9
Curator Summary
The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
Computational Description
plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 1558 Blast hits to 1409 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 155; Plants - 1258; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
Link
InterPro Scan - TAIR