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GT14843

CSHL Arabidopsis genetrap mutant lines

Original: GT14843

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14843

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347145 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -392; Region: promoter
    Flanking Genome Sequence: GT14843 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATTGTT GCGACATGTC 
    TTTCGTGTGG GTTTGCGTGA ATTGACGATT TTGCTCAATG TGATTTCTGA 
    ATATGTGTTC GTGTTGGCCA TATGGTGTAT TCATGAAAAT AACTTTATAG 
    AAGGTTAAAT AGTATTAGAT TTAGGATATA TGTCAATCTT CTGTTTCTCT 
    ATATTTACTC CGATACGTTG TTATCTCCTA TGAGGCAACT GCTGTTGTAT 
    AAATACCTCT CAAATTCTCA AATTCTACTC CGATACTAAA AACTTGAATG 
    GTAATCGTTT TCGTATATGG GAGTAACAAA TCAAGGGAAA CCAAAGAGAA 
    GCTAATGTTG GATTATGGAG AAAATCAAAT CATTATCTTC TGATCTGTCT 
    GCTCACATAA AGATAAACAA GGATATGTAT AATGTGAAAT CTATTTCGTT 
    GTCCGCGCAT AATATCGGGA AGGTTTAGAA TGTTATATCA TTAGCAAATT 
    CCCAATGTTC ACACAGTTAC AAAATAGTTA CAGTTTGCTA AATGTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347215 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: -322; Region: promoter
    Flanking Genome Sequence: GT14843 - 5-prime edge 
    TACTTTCTCC CTGGCAACAT CAGCCAATGT CACGTGGTCA CAAACCAAAT 
    TAAACCGAAC CAAACCCTCT TTAACCGGAA CTCCCACTCT TGCAATAAAA 
    TAACAAAACC AATGAACCAA AATCGCCGCC GAAAGGGCAA AAATCGTTAA 
    TAAACAAACC ACACGGAAGA AGATGAGTCC CGTCACAATC AAATCAGGCC 
    AATCTCACGT TATCCCAAAC CAAAACCAAG TAAACCGGAA ATTCCACTCT 
    TTCTTTTAAC AACAACAAAC CAAAAAACAC GATCGCCGCC ACAAGGGCAA 
    AACCGTCAAT TCACAAGTAG ATCCTGTCAC GTGATCCCAA TGATAAAACC 
    AATCCTCTCT CTCTCTCTCT CTTTTCTCGG AGCCCTTTTT CAGTCATGGC 
    GATAACCGCA TACGACGCTC TCACGGAGAG ACAAAAAGCC CCCAAAGTCC 
    TCCTTATTAA CGATTTTGCC ATCTCTTCT

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR