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GT14858

CSHL Arabidopsis genetrap mutant lines

Original: GT14858

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14858

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4322 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon20 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: GT14858 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC GTTGGGCACT GCTGGTTTTG 
    AGGTGAGAAG AGTAGGCAGC TTCTGCGTTT ATGAAGTAGA CTGAGTTCTC 
    TGCTGCCTCA GCAACCCAAA TTTCGTTTGT CACATCCTTT GCTCTTTTAA 
    TTAGATTGCA AAATCCGACC TGCCAAAAAT TAAGACCCAT AACAAGCATA 
    TATTTTTCAA AATTTAATCT CTTGGTGCAT ATTCTCTCTG TGTAAAACTA 
    GACAAAGATT AGAATTTGTA CATACCACGG ATCCAACCAA ATTATGGCTG 
    ATGTGGGAAA CAGAGCTATC ATCCATGAAT GAGGTGCTGA AGCTTATAGC 
    AAGAAGACTG TTTGAGATTT CCCCTGAATG TTGTGCGGAT CCATCTGTCA 
    CAAACACCCA CTGCTTCTTT TGTAGAACAT CCGTGTATGC ATTTCCAACA 
    TATACAACGT ACGCAGCGAT ATCAAATTCA CTGAAGGACA TAATTAGAGA 
    TGACAGGGTA TAGATTAGCA AAGTGCGGTA AAGAGTGTTT CATAAAAAGC 
    TTGGACTACT GAGATTAACC TTGAAAGAGG AATTTCACCA AGATTTGACA 
    AAGAGATTGG TTTACGAGGG TTGGAAAAAG GGCCTGAA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR