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GT14861

CSHL Arabidopsis genetrap mutant lines

Original: GT14861

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14861

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 565601 [Map]; Strand: c
      • AT2G02180.1 - [+] show detail - tobamovirus multiplication protein 3
        Distance: 2368; Region: intergenic
      • AT2G02190.1 - [+] show detail - transposable element gene
        Distance: -2272; Region: intergenic
    Flanking Genome Sequence: GT14861 - 5-prime edge 
    CTTTCTCCCT GATTATCATC ACTCCGTCTA CCACTTTTAA AGGATATGAA 
    TGTGACGGAT CAAATCATTT TCCCTTTTTA AGCCTTTACG TAAGTAACAC 
    ACTCCATTTG ATTTTGTGTT CAACATAAAC CGCTGCAAAA TGACAAAATC 
    AGATTAATGA TCATCCGTTT CAATCCATTT CTGAAATTTT GGTACAAGTT 
    AAACAAAATT CTATGTACAT TATAACAAAA TCGTTTTCAG TGATCTTTAA 
    CCAATGTATT TCATCTCACT CGACAAAGTA TGATCTAAAT TCTAAGAGTA 
    CTCTATCAAA TCAACGAACG GTGAGAGATT CACTAAAACA TCAAAAGACA 
    GAACCTCAGT TTTAGATTTA ATTTCATTAA CTTCTTTACC CATCTTATCA 
    GTATTTTGTG ACCTATCAGA TACATATCTC AAATGCTTTT TTCTTAAAAC 
    TTCGTAAGAA GATATGCAAG ATGTCGTAAG CATTGTAGTT TAAGCAAAGT 
    AAAACAAAAC GTTACCTTTG TAGGCTTGTA GGGTGATGTC TTTGAGTAGC 
    TTGTGGAATG AAAACATATC ACAAGAATAA AAACCGAGAG TGT

AT2G02180.1

Model type
Protein coding
Short Description
tobamovirus multiplication protein 3
Curator Summary
Necessary for the efficient multiplication of tobamoviruses.
Computational Description
tobamovirus multiplication protein 3 (TOM3); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1084) (TAIR:AT1G14530.2); Has 262 Blast hits to 261 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02190.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.3e-81 P-value blast match to Q9SKL7 /23-182 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR