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GT14866

CSHL Arabidopsis genetrap mutant lines

Original: GT14866

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14866

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10529912 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14866 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTAGGC 
    CAACAGTTGT GGTTCATGAA CCGACCAACA TTTCCTTTCT CCTTGGCGCT 
    TATCAAGACT TGCGTTGGAA GATTAGCATC TTCAGAGACT TGTTCGCAAG 
    CATCTTCACA CAAAAGCTCC GGTTCATAGT TCCATCTGAA GCTATGATTT 
    ATCCGAGATG TATCGAACAA GTAGTCGTCA TCTTCTTCTA CTTCTTCTTT 
    CATCCTCACT CGACGAGGNN NNNNNCGCGA TAAAAGTTCC AGCTCGGATT 
    GGATCCCAAG AACGTAAACC CCAACCACAG TTTGATGTCT TAAACACTTC 
    CAAGTGGAGC TTCAAACCGG TTTCAACCAT TCGGGTTGGA CAAGATCCAC 
    CACACTCGTA AATCAATGGT TTACGACAAA CCAAAATGTT GTTATGGTAT 
    GGTAACTGAC CACAGTTTTT TAGAATGCAT GTGCAGTTTT GATGAATGTA 
    TGACTGAACA AGTGATTGAC TATCAACATT AACATCATTC ATCATACCTG 
    AGTAACACTG AGATCTAATG TAGTCAAAAT CGTCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10529851 [Map]; Strand: c
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14866 - 5-prime edge 
    ACTTTCTCCC TGGGCCTAAT GTTTTCTGGC AGCCTATAGA GTATGATGAT 
    AACAACGGTC ACATATATGT TCGCATTGGA CTTTTTGCGA TGAAGCACAT 
    TCCTCCAATG ACAGAGTTAA CATATGACTA TGGAATTTCT TGTGTGGAGA 
    AGACTGGAGA AGACGAAGTA ATTTATAAAG GAAAGAAGAT TTGTCTCTGT 
    GGTTCAGTCA AATGTCGTGG CTCTTTTGGC TGATTTGGAC TTTTTTATAA 
    TTTGTGTTTT CGTTTGTTTG CTTTTTTAGC TTCTTTGTTT CTTTTGTTTA 
    GTTGACAAAA AAAAAAAAAA AAAAAGGTTT TTTTTTTTTT TGGGGGGATT 
    TAAAACCTTG GGGGTTGTTT TTTATTTAAC CCCCCGGGGG GGGTGTTTTT 
    TTTTTTGGGG GGGGTTTTTT TGTTCCAAAA AAATTAAAAA AGGGTGAAAA 
    ATTTGAAACC CTTTTTTCCG GGGGGGTTCC TTTTTTTTTT AAACC

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR