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GT14871

CSHL Arabidopsis genetrap mutant lines

Original: GT14871

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14871

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24537722 [Map]; Strand: w
      • AT1G65920.1 - [+] show detail - Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
        Distance: -8428; Region: intergenic
      • AT1G65930.1 - [+] show detail - cytosolic NADP+-dependent isocitrate dehydrogenase
        Distance: -1164; Region: intergenic
    Flanking Genome Sequence: GT14871 - 3-prime edge 
    TAGAGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AGGCCTTTGA 
    AACAATTCTT TGCCTTTGAA AAACAAATAG AAAAATATAT GGTTCCTGAA 
    TTTTGATAAC AAACTTCTTG TGTTCATCTC ACTCGACAAC ACGNCNACAC 
    CACCAGTTTG AAACAATAGA ACAACAAACA AATACTAACA GACTCTGGAT 
    ACTCTCCGAA AACTTATGAG GTAGAAATTG TTGACATTGC TTCCGGGTAA 
    ATGGCAAGTG ATAAACAAAG TTAGGTTGTA GATAGGCCCT AACATAATTA 
    TAGAGAATAT GTTCAAGCTT TATATGTTCG GAGATATCTT GAAAGAGAGC 
    TTCTAAGAGA TATGACGAAC GTTTTATTAT CTTTTCATAC TGCATACATG 
    ATTTTGTACA ATTTGTTTAT GTTGTACTAA CTACAAAGCT TAAAACCCCA 
    TATATGGAGT GGGCCACTAG TAAGCTATTT CTTCAATCAT CTCACACATA 
    GCCTTATTGG TTTTGCTCTA TATATATTTT GAGCCCAAAC AAGTGGCCCA 
    CTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3873211 [Map]; Strand: w
      • AT3G12143.1 - [+] show detail - pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 5...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT14871 - 5-prime edge 
    GTGTTTTATT CAGAGGAGGT TGAGACTCTT GAGCATGGTG ATCGCGGTTG 
    GGATATTTCC GGACGATGTA TTGGCGGAAA GGTAGAGGTA GGTGACGCGG 
    CCGTCAGTGC ATTCCACTCC GATCCAGCCA GTACAACAGC CGGTTCGGGG 
    GTTCCAGGAG GAGAGGTAGG GAGGGTTGTT AAGGGACTTC TTGATTTGAA 
    GGAGGGCATT ATTGTCATTT GGGTTGCAAC TGTAGGAAGA TGGGAGAGAT 
    AAAGATGATG GAGAAGAAGA TAGAGAGATG AAGAAGGAGA TTCATTGTGA 
    TCATGGGTGT GGTTACTTTG AGCAGTTAAA CAACTTGTGA TCTATATAAC 
    AGAGACTTCA ATGGAACACA GCTGTGTAAT GTTACTGATT TTGTACAGTT 
    TGGGTTCTAC ACTACTCCTA AAAGTTCTAA CGTACAATAA CCTTTTTATA 
    ACATAAATTC AATTCAT

AT1G65920.1

Model type
Protein coding
Short Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Computational Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: zinc ion binding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Pleckstrin homology (InterPro:IPR001849), Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G42140.1); Has 20784 Blast hits to 8293 proteins in 486 species: Archae - 65; Bacteria - 2335; Metazoa - 8187; Fungi - 1149; Plants - 2727; Viruses - 3; Other Eukaryotes - 6318 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65930.1

Model type
Protein coding
Short Description
cytosolic NADP+-dependent isocitrate dehydrogenase
Curator Summary
Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.
Computational Description
cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12143.1

Model type
Pseudogene
Computational Description
pseudogene, similar to polygalacturonase-inhibitor protein, blastp match of 53% identity and 7.5e-64 P-value to GP|18148923|dbj|BAB83520.1||AB064545 polygalacturonase-inhibitor protein {Citrus sp. cv. Sainumphung}
Link
InterPro Scan - TAIR