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GT14887

CSHL Arabidopsis genetrap mutant lines

Original: GT14887

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14887

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25224668 [Map]; Strand: w
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 9494; Region: intergenic
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: -5597; Region: intergenic
    Flanking Genome Sequence: GT14887 - 3-prime edge 
    AGTAACATAG ATCAGATACG TGTGTTGAAA ATACGCCCAA GTGAAGTATT 
    TGTCTTTTGC ATAATTACAT GTATGTGTAT GTACGCAATG TTTGCTTATG 
    ACTGTATTTT ACAGCGTATA TCTACGAAAG CAAAAAATGA TGAAGTGTTG 
    TACCAACAAA CCCTTAATTA AATATATTGC ACCTTTTAAA GATCGGCCAT 
    GCATGCAAAA GGTGGAGAGT ACGTAAGAGT AACCAACAGA TTCTCTGAAA 
    ATAATTTAAA ATCAGGTTTT ATAACAACTT TTGGGAAGAA AACAAGTAAA 
    GCAACCTCAC ACGGTTGTCT GTAAACAAAT AAATATATAT TAATTTCAAA 
    GTTACCTTCG CTAAAATGTG CATTGGAATT AACTTAGAAC GTCGCCAATC 
    TCTGTCTCTA TACCTTGGCG TAAAATGATG GGATTTAATT GATGAGTTTC 
    CTTATTGGCA ACGAGACAAA TTTAGGGGGA ACATTAGATG TTAGTTAAGT 
    ATTTGGTACT ATTTTGGTTT GTCAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25224781 [Map]; Strand: w
      • AT1G67330.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 9607; Region: intergenic
      • AT1G67340.1 - [+] show detail - HCP-like superfamily protein with MYND-type zinc finger
        Distance: -5484; Region: intergenic
    Flanking Genome Sequence: GT14887 - 5-prime edge 
    TCCATCCTAC TTTCTCCCTG CATAAAAGAC ACTCTTTTTC TATTTTATTG 
    TTTTAGAAAT CGTTAAGGCT AGAGGTATCA ATAAAAATAA AAATACAAAG 
    ATTCCACTAC TACTCAACGA GTTTGGCCAT ATCATAGGGT CTAAAATGGG 
    ATGGATTATA GGGACTACAA CAAATACATA TATTAGTAGG CGTTGCGATT 
    TACGGGTTAA TGTGGGTCAA AATACTTTTA ACGTTGTAAT CTTATATAAT 
    TTTATATCAT ATAAAACTAA TATACTATAT AAGTGACTCT TGATTTAGTG 
    GTTTTTGAAA GAAAATAAAA AATATTAACA AGAAGTTTTC TAGTTCGAGA 
    CTCTTTCGAA AGAAACATAT TCCCTTTCAT TCGGATCCGC GAAAAAATCA 
    TGAAGTTTTT ATCCAAAATT TGTAGTCACA TGTTCGCTAA AATCCACAAA 
    TAAACTCAAT CAGCAGCATA ACAAATTGAG TTAGTTAGCT TTGAAATTCC 
    TATTTTCTCT AACAACTGTA CAACATACAA ATCGTCCACG AATGTATAAT 
    CTCCTAACGG CGTAATATTT CAT

AT1G67330.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Computational Description
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67340.1

Model type
Protein coding
Short Description
HCP-like superfamily protein with MYND-type zinc finger
Computational Description
HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT5G50450.1); Has 623 Blast hits to 604 proteins in 167 species: Archae - 0; Bacteria - 161; Metazoa - 77; Fungi - 145; Plants - 151; Viruses - 2; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR