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GT14894

CSHL Arabidopsis genetrap mutant lines

Original: GT14894

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14894

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2927847 [Map]; Strand: c
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14894 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATA CTGGAGATGT 
    CGCCCGAAGA AGCGATGATG CAATTCAAAA AGTTCAACGA GACTTTCGAG 
    AGCACGTGCG AGGCACAGAG TGAGTGCATC GTACTAGATC CGAAGCTGTT 
    GGACGAGATG AGAATTTCGA TCGGGAGAAA ACTGTTACCG GTTTACCGCG 
    ATTTTTACAA CGCTCATAGA AATGCCGTTA TGTTAGCGGG AACGGAAGGC 
    CAGTGGAAGG TCCGATATAA CCCTGAAGAT ATTGGAAACC ACTTGTCGGA 
    GCTGTTTAGC GGAAAGGGTA TTTCGGAGAA AGGATATGTC TGTACGCCAG 
    ATTTTTGTGT TACAACACCT ACTCCAACTC CTGTACGAAA GACTCGATCT 
    TTGTCATGCA GAAGATTTTG AAAGGGAAAA AAATAATGTT TTCAAAATTT 
    ATTTTCCCTA TTACAGTATT TTGATATTTT TTTGTAACAA CTTAATTAAT 
    TGATGTCATG GAAGGTGTAA GTTACGACTT ACAACAAGGA ACATGGCATA 
    TTTATGAGGT ATTGTGACTA AACATTTAAT CATCATGTGA AATATAACTA 
    CGATCATCAT CATATATGTG TATGTAGAGA ATCTTTGGTC CTTTTTTGGT 
    GGGTGAGGAC CGTTAGGTAG CGAATAATCC AAGTCAAGTC ACATTACAAG 
    ATTTGTAGAA TCCTAATTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2927845 [Map]; Strand: c
      • AT3G09530.1 - [+] show detail - exocyst subunit exo70 family protein H3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14894 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TACTGGAGAT 
    GTCGCCCGAA GAAGCGATGA TGCAATTCAA AAAGTTCAAC GAGACTTTCG 
    AGAGCACGTG CGAGGCACAG AGTGAGTGCA TCGTACTAGA TCCGAAGCTG 
    TTGGACGAGA TGAGAATTTC GATCGGGAGA AAACTGTTAC CGGTTTACCG 
    CGATTTTTAC AACGCTCATA GAAATGCCGT TATGTTAGCG GGAACGGAAG 
    GCCAGTGGAA GGTCCGATAT AACCCTGAAG ATATTGGAAA CCACTTGTCG 
    GAGCTGTTTA GCGGAAAGGG TATTTCGGAG AAAGGATATG TCTGTACGCC 
    AGATTTTTGT GTTACAACAC CTACTCCAAC TCCTGTACGA AAGACTCGAT 
    CTTTGTCATG CAGAAGATTT TGAAAGGGAA AAAAATAATG TTTTCAAAAT 
    TTATTTTCCC TATTACAGTA TTTTGATATT TTTTTGTAAC AACTTAATTA 
    ATTGATGTCA TGGAAGGTGT AAGTTACGAC TTACAACAAG GAACATGGCA 
    TATTTATGAG GTATTGTGAC TAAACATTTA ATCATCATGT GAAATATAAC 
    TACGATCATC ATCATATATG TGTATGTAGA GAATCTTTGG TCCTTTTTTG 
    GTGGGTGAGG ACCGTTAGGT AGCGAATAAT CCCAGTCAAG TCACATTTAC 
    AGATTTGTAG AATCCTATTA AATACCACAA ATACTTTTGT ACAACTAATA 
    TTCAACGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2206546 [Map]; Strand: w
      • AT3G06990.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14894 - 5-prime edge 
    CACTTTCTCC CTGTAATACT TGCGCAGGAT GCGATGAAGA TTATGGCTTC 
    TGCTACTACT GCGCAAGCTG CAGTTTTCGA GCACATTCGG AATGCATCGA 
    GTGGCCAGAC ACCATCGACC ACCCGAGTCA CTCCAGACAT CCTCTCAAGA 
    AAGTCTCGCC CGGGACAATT GACTATACAG ATGGCAAATG TCATTTTTGT 
    AGAGAAGAAC TTGTTGATCC CATGTATCAT TGTTCCTTGT GCAACTTCAG 
    CGTAGATGTG AATTGTTGGA GGCATCCGCC ACAGCGTACT ATTTATCAAC 
    CAAAGAGCCA CGAGCATACA TTCACCCTCA TGCCGAGAAA GATCACATTC 
    ACTTGTAACG CATGTGGGAT GCTTGGTGAT TGCAATCCTT ACTTTTGTTT 
    TGAATGTGGA TTCATGCTGC AAAAAAGACT GCATTGATTT GCCCCGAGTG 
    ATCAACATCA ACCGTCATGA CCACCGCATT TCTCGCACTT ATCATCTCGG 
    CCACGGCGAT TGGGATTTAT GTGGACTTTG TCGCAAAGAG ATAGATTGGA 
    GTTTTGGAGC TTTCACTTGC AAGCGTTGTC CTAGTTATGC TGTTCATTCA 
    AAGTGTGCGG TAAGGAAAGA TGTGTGGGAT GG

AT3G06990.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G07000.1); Has 1311 Blast hits to 600 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1303; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09530.1

Model type
Protein coding
Short Description
exocyst subunit exo70 family protein H3
Curator Summary
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description
exocyst subunit exo70 family protein H3 (EXO70H3); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein H4 (TAIR:AT3G09520.1); Has 786 Blast hits to 774 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 29; Plants - 616; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR