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Mutant Lines
GT14899

GT14899

CSHL Arabidopsis genetrap mutant lines

Original: GT14899

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14899

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 19381384 [Map]; Strand: c
- AT5G47850.1 - [+] show detail - CRINKLY4 related 4
  Distance: -302; Region: promoter
- AT5G47860.1 - [+] show detail - Protein of unknown function (DUF1350)
  Distance: -135; Region: promoter

AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AATAATAGGG 
CTTGTACAAA TCCTTCATGA GAGGATGACA CTCTTCGTCA TTTAATGAAA 
GCAAATGTGG CCCATTAAGT ATAATTGAAG CCCAATCACC TTTTACACAA 
TTAACAATTA AGTATTTGGT CTCATCACAA TGTTTGCGTT AGCTGCGAAA 
CAAGATGCTG TTACAGTCAT AGAAGTCTTA TGCGTACACG ACTCCGATTT 
CAAAATCTGA ACGGAATATA AACTCTCGAC GACGAAAATC TCAAAATACC 
CAAAATCTCC TCCGACTCCG AGCTATGGCT ACGTGTTTCA TCTCACTCGA 
CCAGTCTTTC TCTCCCCGCC GGAGAATCTG TAGCTTTTCT CATAATCGC

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 223571 [Map]; Strand: w
  - AT2G01490.1 - [+] show detail - phytanoyl-CoA dioxygenase (PhyH) family protein
    Distance: 153; Region: intergenic
  - AT2G01500.1 - [+] show detail - Homeodomain-like superfamily protein
    Distance: 585; Region: intergenic
Flanking Genome Sequence: GT14899 - 5-prime edge
```
TGGATTTTGT TTGAAATGTA TATTGTGATT GAAGGAATGG GACACAACTA 
TCTCTGGCCT ATCACAGTTG CACCAGGGCA AA
```

AT2G01490.1

Model type: Protein coding
Short Description: phytanoyl-CoA dioxygenase (PhyH) family protein
Computational Description: phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01500.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Curator Summary: PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.
Computational Description: PRETTY FEW SEEDS 2 (PFS2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: primary endosperm nucleus, nucleus; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 564 Blast hits to 564 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G47850.1

Model type: Protein coding
Short Description: CRINKLY4 related 4
Computational Description: CRINKLY4 related 4 (CCR4); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: CRINKLY4 related 3 (TAIR:AT3G55950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G47860.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF1350)
Computational Description: Protein of unknown function (DUF1350); LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT3G43540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR