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GT14931

CSHL Arabidopsis genetrap mutant lines

Original: GT14931

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14931

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11547375 [Map]; Strand: w
      • AT1G32100.1 - [+] show detail - pinoresinol reductase 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14931 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    TATTATTACT TTTTGTTTCT TGTTGTAATT ATAATGATAT ACGTAAGATT 
    AATAATTTCA GCGGTTTTTA CCATCTGAAT TTGGTATGGA TCCACCACGT 
    ATGGGACATG CGCTACCGCC CGGAAGAGAA ACCTTTGACC AGAAAATGGA 
    AGTGCGTCAG GCGATAGAGG CTGCCGGAAT TCCTTACACT TACGTTGTGG 
    GTGCTTGCTT TGCCGCCTAC TTCGCCGGAA ACTTGTCTCA GATGGTAACT 
    TTACTTCCTC CGAAAGAAAA AGTTAATATT TATGGTGATG GAAATGTAAA 
    AGGTAAAATT TTCAAACTCT TTTTTAACTC TTTGTGGTTA TATACCTTTT 
    AAGACTTTAA ATTAGATCAA GCCCATCTAA ACCAATCAAT TTAAACCGTT 
    TTATATTTGT AGTGGTGTTT GCGGATGAAG ATGATATCGC AAAATACACC 
    GCGAAAACGT TAAACGATCC ACGGACATTA AACAAAACCG TGAATATTAG 
    ACCTCCCGAC AACGTTCTCA CGCAGTTGGA ATTAGTTCAG ATCTGGGAAA 
    AGCTAACCGG AAAAGAATTG GAGAAAACAA ATATTGCTGC ACAAGACTTC 
    CTCGCCAACA TTGAACGTAA GTCCAAGCAA TAGTGTAACG TAATCTACTT 
    TATGTTCGGC AACATATGCT TAATGGGCCA GGCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11547371 [Map]; Strand: w
      • AT1G32100.1 - [+] show detail - pinoresinol reductase 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT14931 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATTATT 
    ATTACTTTTT GTTTCTTGTT GTAATTATAA TGATATACGT AAGATTAATA 
    ATTTCAGCGG TTTTTACCAT CTGAATTTGG TATGGATCCA CCACGTATGG 
    GACATGCGCT ACCGCCCGGA AGAGAAACCT TTGACCAGAA AATGGAAGTG 
    CGTCAGGCGA TAGAGGCTGC CGGAATTCCT TACACTTACG TTGTGGGTGC 
    TTGCTTTGCC GCCTACTTCG CCGGAAACTT GTCTCAGATG GTAACTTTAC 
    TTCCTCCGAA AGAAAAAGTT AATATTTATG GTGATGGAAA TGTAAAAGGT 
    AAAATTTTCA AACTCTTTTT TAACTCTTTG TGGTTATATA CCTTTTAAGA 
    CTTTAAATTA GATCAAGCCC ATCTAAACCA ATCAATTTAA ACCGTTTTAT 
    ATTTGTAGTG GTGTTTGCGG ATGAAGATGA TATCGCAAAA TACACCGCGA 
    AAACGTTAAA CGATCCACGG ACATTAAACA AAACCGTGAA TATTAGACCT 
    CCCGACAACG TTCTCACGCA GTTGGAATTA GTTCAGATCT GGGAAAAGCT 
    AACCGGAAAA GAATTGGAGA AAAACAATAT TGCTGCACAA GACTTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 362419 [Map]; Strand: w
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT14931 - 5-prime edge 
    TGTTGCACAC GACAATCCAT TTCCATTACC GCACTCATAC AATGCCGACG 
    TAGGATGGTT CACATTCTCT GTCTGAACCC TAATTATGGC TTCTTCTCCG 
    ACGATCTTCA CTTGCACTTT CAAGTCAGAG ACTCTGTTTG ATTTTGAAGG 
    TTTCTGGTTC ACTTGGTACT CAACGGAAGA CGGAGACGTA TTGCTGCTGC 
    TGTTGTCTAA TTTATCTGTC TCCGTCATCG TCATCTTCAT TTTCTTCATC 
    TCACTCGA

AT1G32100.1

Model type
Protein coding
Short Description
pinoresinol reductase 1
Curator Summary
Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
Computational Description
pinoresinol reductase 1 (PRR1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 2 (TAIR:AT4G13660.1); Has 2085 Blast hits to 2085 proteins in 479 species: Archae - 27; Bacteria - 779; Metazoa - 2; Fungi - 496; Plants - 600; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00870.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR