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GT14942

CSHL Arabidopsis genetrap mutant lines

Original: GT14942

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT14942

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16776614 [Map]; Strand: w
      • AT4G35260.1 - [+] show detail - isocitrate dehydrogenase 1
        Distance: -289; Region: promoter
    Flanking Genome Sequence: GT14942 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCG 
    TGCAAGTTAT GATTTTGCAA ATAATGTAGT ACTCTGCATG ATCAATGATT 
    TTGCGGCAAT TTTGTAAATA TCTGAAGTGA AAAATAAGCA AATGTCAAAC 
    TAAATTAATT ACTGAGTAAA TGTTGATGAA GTTAAATGAT TGGGGGGATT 
    TGTATAAATA TCTTAATTGA CGATTCTGAA ACAAAGTGGT CTAATCGGTG 
    ATTATCTATT GTTTTATGGA AATATCTTAA TGAGATGAAG ATTTTGGGGC 
    GAATTGTGTA AATAACTAAA TTTTAACAAT AAACGCTTTT CGTCCGCCTC 
    CAGCTCCCAA AAGCCAAAGG GCGAATCTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 84569 [Map]; Strand: w
      • AT5G01215.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT5G01210.1 - [+] show detail - HXXXD-type acyl-transferase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT14942 - 5-prime edge 
    CCTACTTTCT CCCTGCCAAA ATCATATCCT CTTTAAACAT TTTTGTCCAA 
    ATAAAATGCC TTCTTGTTCG GTAACTGAAA TTTCAAAATG TATCGTCTAT 
    CCGGAGAAGA AGTCCACCGT CTCCGATCTC CGTCTCTCCG TCTCCGACCT 
    CCCTATGCTC TCATGTCATT ACATTCAAAA AGGCGTCCTC CTCACCAGCC 
    CTCCTCCT

AT4G35260.1

Model type
Protein coding
Short Description
isocitrate dehydrogenase 1
Curator Summary
Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
Computational Description
isocitrate dehydrogenase 1 (IDH1); CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase subunit 2 (TAIR:AT2G17130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01210.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT2G39980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01215.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01210
Link
InterPro Scan - TAIR