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GT14946

CSHL Arabidopsis genetrap mutant lines

Original: GT14946

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT14946

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3250027 [Map]; Strand: w
      • AT5G10330.2 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: -116; Region: promoter
      • AT5G10330.3 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: -61; Region: promoter
      • AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14946 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATCTC AGTCACTTTA 
    GTCTCCCTGC TCACGACCCT TCTCGTCTAC TTAGGGGTAT CTCCATTTGC 
    CCCTCTTCAT CTCACTCGAC G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3250027 [Map]; Strand: w
      • AT5G10330.2 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: -116; Region: promoter
      • AT5G10330.3 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: -61; Region: promoter
      • AT5G10330.1 - [+] show detail - histidinol phosphate aminotransferase 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT14946 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGATCTC AGTCACTTTA 
    GTCTCCCTGG TCACGACCCT TCTCGTCTAC T

AT5G10330.1

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10330.2

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); FUNCTIONS IN: histidinol-phosphate transaminase activity; INVOLVED IN: histidine biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: stem, fruit, root, flower; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35250 Blast hits to 35250 proteins in 2924 species: Archae - 1034; Bacteria - 25749; Metazoa - 263; Fungi - 394; Plants - 462; Viruses - 0; Other Eukaryotes - 7348 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10330.3

Model type
Protein coding
Short Description
histidinol phosphate aminotransferase 1
Curator Summary
Encodes histidinol-phosphate aminotransferase that catalyzes the eighth step in histidine biosynthesis. Loss of function mutations are embryo lethal.
Computational Description
histidinol phosphate aminotransferase 1 (HPA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Histidinol-phosphate aminotransferase (InterPro:IPR005861), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: HISTIDINE BIOSYNTHESIS 6B (TAIR:AT1G71920.2); Has 35141 Blast hits to 35141 proteins in 2910 species: Archae - 1034; Bacteria - 25652; Metazoa - 263; Fungi - 377; Plants - 462; Viruses - 0; Other Eukaryotes - 7353 (source: NCBI BLink).
Link
InterPro Scan - TAIR